RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LOXL3P58215 753 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 SAMD5Q5TGI4 173 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 OR4X2Q8NGF9 303 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 MS4A6AQ9H2W1 248 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 MRPL27Q9P0M9 148 aaKnown RBP12.61□□□□□ -0.39
SHH-201ENST00000297261 FREM1Q5H8C1 2179 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 KIR3DL3Q8N743 410 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 OR5A1Q8NGJ0 315 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 IFI27L1Q96BM0 104 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 IGLL1P15814 213 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 PRCDQ00LT1 54 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 Q6ZS92 163 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 ITGB1BP1O14713 200 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 HBDP02042 147 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 NBL1P41271 181 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 COA6Q5JTJ3 125 aaKnown RBP12.6□□□□□ -0.39
SHH-201ENST00000297261 MFAP4P55083 255 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 PRB3Q04118 309 aaPredicted RBP12.6□□□□□ -0.39
SHH-201ENST00000297261 Q6P435 159 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.6□□□□□ -0.39
SHH-201ENST00000297261 PLSCR4Q9NRQ2 329 aa12.6□□□□□ -0.39
SHH-201ENST00000297261 TRAV8-1A0A0A6YYK1 113 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 COL4A2P08572 1712 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 HSD52Q0P140 79 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 IGHV1-18A0A0C4DH31 117 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 ZNF503-AS2A6NEH8 195 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 NDUFA3O95167 84 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 COQ2Q96H96 371 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 FOXA2Q9Y261 457 aaPredicted RBP12.59□□□□□ -0.39
SHH-201ENST00000297261 LY96Q9Y6Y9 160 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 TEX43Q6ZNM6 134 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 ATP5L2Q7Z4Y8 100 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 C1RLQ9NZP8 487 aa12.59□□□□□ -0.39
SHH-201ENST00000297261 IGHV3-49A0A0A0MS15 119 aa12.58□□□□□ -0.39
SHH-201ENST00000297261 TRBV6-6A0A0A6YYG2 114 aa12.58□□□□□ -0.39
SHH-201ENST00000297261 CIARTQ8N365 385 aaPredicted RBP12.58□□□□□ -0.39
SHH-201ENST00000297261 MTURNQ8N3F0 131 aa12.58□□□□□ -0.39
SHH-201ENST00000297261 ZGRF1Q86YA3 2104 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 KIR2DL5BA0A0G2JN68 375 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 KIR2DL5BA0A0G2JPC4 375 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 TCRBV4S1A1TA0A5B7 111 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 LEPP41159 167 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 KIR2DL5AQ8N109 375 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 ZNF256Q9Y2P7 627 aaPredicted RBP12.58□□□□□ -0.4
SHH-201ENST00000297261 CD5LO43866 347 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 ASPHD1Q5U4P2 390 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 LYPD6Q86Y78 171 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 FER1L6-AS1Q8NA97 138 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 ZNF479Q96JC4 524 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 PHLDA3Q9Y5J5 127 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 PRUNE2Q8WUY3 3088 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 NDUFS8O00217 210 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 PSG9Q00887 426 aa12.58□□□□□ -0.4
SHH-201ENST00000297261 BCL6BQ8N143 479 aaPredicted RBP12.58□□□□□ -0.4
SHH-201ENST00000297261 CD24P25063 80 aa12.57□□□□□ -0.4
SHH-201ENST00000297261 PPIFP30405 207 aaKnown RBP12.57□□□□□ -0.4
SHH-201ENST00000297261 RCHY1Q96PM5 261 aa12.57□□□□□ -0.4
SHH-201ENST00000297261 RABAC1Q9UI14 185 aa12.57□□□□□ -0.4
SHH-201ENST00000297261 C16orf92Q96LL3 132 aa12.57□□□□□ -0.4
SHH-201ENST00000297261 ATP5LO75964 103 aa12.57□□□□□ -0.4
SHH-201ENST00000297261 SLAQ13239 276 aa12.57□□□□□ -0.4
SHH-201ENST00000297261 KIR3DS1Q14943 382 aa12.57□□□□□ -0.4
SHH-201ENST00000297261 SCRT1Q9BWW7 348 aa12.57□□□□□ -0.4
SHH-201ENST00000297261 IGHV3-23P01764 117 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 CEACAM8P31997 349 aaPredicted RBP12.56□□□□□ -0.4
SHH-201ENST00000297261 COLCA1Q6ZS62 124 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 PYGO2Q9BRQ0 406 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 M0R381 172 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 Q6AWC8 147 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 KLRB1Q12918 225 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 TMEM170BQ5T4T1 132 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 ZCCHC24Q8N2G6 241 aaKnown RBP12.56□□□□□ -0.4
SHH-201ENST00000297261 EXOC3-AS1Q8N2X6 119 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 PSG8Q9UQ74 426 aa12.56□□□□□ -0.4
SHH-201ENST00000297261 NCR2O95944 276 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 COX6CP09669 75 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 DLX6P56179 175 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 OR5AN1Q8NGI8 311 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 FAM231BA6NCW3 169 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 RPRMLQ8N4K4 120 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 VKORC1Q9BQB6 163 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 OTORQ9NRC9 128 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 MBD3L4A6NDZ8 208 aaPredicted RBP12.55□□□□□ -0.4
SHH-201ENST00000297261 MBD3L3A6NE82 208 aaPredicted RBP12.55□□□□□ -0.4
SHH-201ENST00000297261 MBD3L5A6NJ08 208 aaPredicted RBP12.55□□□□□ -0.4
SHH-201ENST00000297261 CCL25O15444 150 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 EMP1P54849 157 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 RASL11AQ6T310 242 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 MBD3L2Q8NHZ7 208 aaPredicted RBP12.55□□□□□ -0.4
SHH-201ENST00000297261 LINC01560Q8TB33 94 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 TNCP24821 2201 aa12.55□□□□□ -0.4
SHH-201ENST00000297261 IGHV3-66A0A0C4DH42 116 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 A0A1B0GW15 77 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 FAM90A9PA6NNJ1 464 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 EVI2AP22794 236 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 RNASE8Q8TDE3 154 aaKnown RBP12.54□□□□□ -0.4
SHH-201ENST00000297261 MALRD1Q5VYJ5 2156 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 EML6Q6ZMW3 1958 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 BSPH1Q075Z2 132 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 SCGB3A1Q96QR1 104 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms