RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 TRAV8-1A0A0A6YYK1 113 aa15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 TMEM8BA6NDV4 472 aa15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 LCNL1Q6ZST4 164 aa15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 C17orf82Q86X59 251 aaPredicted RBP15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 TEX38Q6PEX7 206 aa15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 TMEM170AQ8WVE7 144 aa15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 IGKV1D-17A0A075B6S4 117 aa15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 SRRM4A7MD48 611 aaKnown RBP15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 CHTOPQ9Y3Y2 248 aaKnown RBP15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 GPR179Q6PRD1 2367 aa15.31■□□□□ 0.04
SMARCC1-201ENST00000254480 ADARB2-AS1A8MUL3 147 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 HBDP02042 147 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 SAMD13Q5VXD3 122 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 Q71RC1 249 aaPredicted RBP15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 HS3ST6Q96QI5 342 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 C20orf204Q6ZNR8 217 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 CYSLTR1Q9Y271 337 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 FANCMQ8IYD8 2048 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 A0A1B0GW15 77 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 TRGV1A0A0A0MS02 117 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 RCHY1Q96PM5 261 aa15.3■□□□□ 0.04
SMARCC1-201ENST00000254480 H0YJW9 148 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 CXCL1P09341 107 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 KLHL30-AS1Q8NEE0 82 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 RBMY1BA6NDE4 496 aaKnown RBP15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 RBMY1EA6NEQ0 496 aaKnown RBP15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 RBMY1DP0C7P1 496 aaKnown RBP15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 RBMY1A1P0DJD3 496 aaKnown RBP15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 RBMY1CP0DJD4 496 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 SRSF4Q08170 494 aaKnown RBP15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 OSTCQ9NRP0 149 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BKO60814 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BJP06899 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BOP23527 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BBP33778 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BDP58876 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 B3GALT5-AS1P59052 145 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BCP62807 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST2H2BEQ16778 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BHQ93079 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BNQ99877 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 HIST1H2BMQ99879 126 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 WNK2Q9Y3S1 2297 aa15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 NAA38Q9BRA0 125 aaKnown RBP15.29■□□□□ 0.04
SMARCC1-201ENST00000254480 BUB1B-PAK6H3BSN5 160 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 PIP4P2Q8N4L2 257 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 SLC25A48Q6ZT89 311 aaKnown RBP15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 VGLL1Q99990 258 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 PAX2Q02962 417 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 FAM166AQ6J272 317 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 ZNF815PA8K554 130 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 D6R8Y8 96 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 RNF223E7ERA6 249 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 DPM2O94777 84 aa15.28■□□□□ 0.04
SMARCC1-201ENST00000254480 TRPM7Q96QT4 1865 aa15.27■□□□□ 0.04
SMARCC1-201ENST00000254480 B4DSR2 109 aa15.27■□□□□ 0.04
SMARCC1-201ENST00000254480 ARFGEF3Q5TH69 2177 aa15.27■□□□□ 0.04
SMARCC1-201ENST00000254480 IGKV1-16P04430 117 aa15.27■□□□□ 0.04
SMARCC1-201ENST00000254480 NTF4P34130 210 aa15.27■□□□□ 0.04
SMARCC1-201ENST00000254480 LYZL1Q6UWQ5 148 aa15.27■□□□□ 0.04
SMARCC1-201ENST00000254480 UBE2DNLQ8IWF7 75 aa15.27■□□□□ 0.04
SMARCC1-201ENST00000254480 TRGV11A0A075B6L2 103 aa15.27■□□□□ 0.03
SMARCC1-201ENST00000254480 LINC00158P58513 81 aa15.27■□□□□ 0.03
SMARCC1-201ENST00000254480 OR5A1Q8NGJ0 315 aa15.27■□□□□ 0.03
SMARCC1-201ENST00000254480 TSKUQ8WUA8 353 aa15.27■□□□□ 0.03
SMARCC1-201ENST00000254480 ZNF876PQ49A33 203 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 Q6P435 159 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 RNF182Q8N6D2 247 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 LHFPL1Q86WI0 220 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 AGMATQ9BSE5 352 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 A0A0G2JRQ6 117 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 E7EQL1 145 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 C5orf64Q2M2E5 130 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 RPP25LQ8N5L8 163 aaKnown RBP15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 TNFRSF14Q92956 283 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 A0A1B0GWJ7 208 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 OVOL1O14753 267 aa15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 MCRIP2Q9BUT9 160 aaKnown RBP15.26■□□□□ 0.03
SMARCC1-201ENST00000254480 SAA4P35542 130 aa15.25■□□□□ 0.03
SMARCC1-201ENST00000254480 SMKR1H3BMG3 65 aa15.25■□□□□ 0.03
SMARCC1-201ENST00000254480 ERCC8Q13216 396 aa15.25■□□□□ 0.03
SMARCC1-201ENST00000254480 LAMTOR2Q9Y2Q5 125 aa15.25■□□□□ 0.03
SMARCC1-201ENST00000254480 LINC00587B1AMM8 73 aa15.25■□□□□ 0.03
SMARCC1-201ENST00000254480 TCF20Q9UGU0 1960 aaKnown RBP15.25■□□□□ 0.03
SMARCC1-201ENST00000254480 PHLDA1Q8WV24 401 aaPredicted RBP15.25■□□□□ 0.03
SMARCC1-201ENST00000254480 CYTL1Q9NRR1 136 aa15.25■□□□□ 0.03
SMARCC1-201ENST00000254480 IGKCP01834 107 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 ZNF138P52744 262 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 TRAV8-2A0A0B4J237 113 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 WISP1O95388 367 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 STAG3L3P0CL85 134 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 TRAV9-1A0A075B6T8 112 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 A0A087WX48 190 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 A0A087WWL8 130 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 IFI27L1Q96BM0 104 aa15.24■□□□□ 0.03
SMARCC1-201ENST00000254480 ASCL4Q6XD76 172 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 MEGF9Q9H1U4 602 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 SIGLEC9Q9Y336 463 aa15.23■□□□□ 0.03
SMARCC1-201ENST00000254480 GLRX5Q86SX6 157 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms