RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 Q9H3A6 140 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 COL6A6A6NMZ7 2263 aa9.02□□□□□ -0.96
CLN3-244ENST00000636147 MUC22E2RYF6 1773 aaPredicted RBP9.02□□□□□ -0.96
CLN3-244ENST00000636147 CACNG7P62955 275 aa9.02□□□□□ -0.96
CLN3-244ENST00000636147 C11orf52Q96A22 123 aa9.02□□□□□ -0.96
CLN3-244ENST00000636147 COL25A1Q9BXS0 654 aaPredicted RBP9.02□□□□□ -0.96
CLN3-244ENST00000636147 SPRR3Q9UBC9 169 aa9.02□□□□□ -0.96
CLN3-244ENST00000636147 NAV3Q8IVL0 2385 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 IGKV1D-17A0A075B6S4 117 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 IGHV3-35A0A0C4DH35 117 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 J3QW42 95 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 ZNF414Q96IQ9 312 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 GP6Q9HCN6 339 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 DOPEY2Q9Y3R5 2298 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 KIAA1549Q9HCM3 1950 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.02□□□□□ -0.977e-9■■□□□ 13.5
CLN3-244ENST00000636147 GUSBP1Q15486 140 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 C16orf54Q6UWD8 224 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 UFC1Q9Y3C8 167 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 DYSFO75923 2080 aa9.02□□□□□ -0.97
CLN3-244ENST00000636147 IGLC7A0M8Q6 106 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 BRWD1-AS2P59051 145 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 MBNL2Q5VZF2 373 aaKnown RBP9.01□□□□□ -0.97
CLN3-244ENST00000636147 ZNF714Q96N38 554 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 FOXA2Q9Y261 457 aaPredicted RBP9.01□□□□□ -0.97
CLN3-244ENST00000636147 INSIG2Q9Y5U4 225 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 TRAV17A0A0B4J275 112 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 LY6G6EA0A0G2JKS1 128 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 CDKN1BP46527 198 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 SMAGPQ0VAQ4 97 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 EXOC3-AS1Q8N2X6 119 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 OR4C13Q8NGP0 309 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 RPEQ96AT9 228 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 U3KQA8 63 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 TMEM189A5PLL7 270 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 FAM231BA6NCW3 169 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 NKX2-8O15522 239 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 FCGR2BP31994 310 aaPredicted RBP9.01□□□□□ -0.97
CLN3-244ENST00000636147 KRTAP27-1Q3LI81 207 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 PET117Q6UWS5 81 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 CACNG8Q8WXS5 425 aa9.01□□□□□ -0.97
CLN3-244ENST00000636147 TANC2Q9HCD6 1990 aa9□□□□□ -0.97
CLN3-244ENST00000636147 TRGV8A0A0C4DH27 118 aa9□□□□□ -0.97
CLN3-244ENST00000636147 IGHV2-70DA0A0C4DH43 119 aa9□□□□□ -0.97
CLN3-244ENST00000636147 C21orf140B9A014 251 aa9□□□□□ -0.97
CLN3-244ENST00000636147 LINC00310P59036 64 aa9□□□□□ -0.97
CLN3-244ENST00000636147 TRAV8-6A0A0B4J262 113 aa9□□□□□ -0.97
CLN3-244ENST00000636147 SMIM27A0A1W2PRY6 76 aa9□□□□□ -0.97
CLN3-244ENST00000636147 FAM90A9PA6NNJ1 464 aa9□□□□□ -0.97
CLN3-244ENST00000636147 MORN5Q5VZ52 161 aa9□□□□□ -0.97
CLN3-244ENST00000636147 DUX4L9Q6RFH8 374 aaPredicted RBP9□□□□□ -0.97
CLN3-244ENST00000636147 CLEC2AQ6UVW9 174 aa9□□□□□ -0.97
CLN3-244ENST00000636147 PRELID3AQ96N28 172 aa9□□□□□ -0.97
CLN3-244ENST00000636147 NDFIP1Q9BT67 221 aa9□□□□□ -0.97
CLN3-244ENST00000636147 HCFC1P51610 2035 aa9□□□□□ -0.97
CLN3-244ENST00000636147 IGHV3OR16-8A0A075B7F1 116 aa9□□□□□ -0.97
CLN3-244ENST00000636147 SRRM5B3KS81 715 aa9□□□□□ -0.97
CLN3-244ENST00000636147 J3KRW8 73 aa9□□□□□ -0.97
CLN3-244ENST00000636147 BVES-AS1Q5T3Y7 98 aa9□□□□□ -0.97
CLN3-244ENST00000636147 TEX45Q8NA69 505 aa9□□□□□ -0.97
CLN3-244ENST00000636147 KMT2EQ8IZD2 1858 aa9□□□□□ -0.97
CLN3-244ENST00000636147 PAX1P15863 534 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 PRR20EP86478 221 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 PRR20CP86479 221 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 PRR20DP86480 221 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 PRR20BP86481 221 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 PRR20AP86496 221 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 C9orf106Q8NAJ2 232 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 JKAMPQ9P055 326 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 IGHV1-24A0A0C4DH33 117 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 TCRBV4S1A1TA0A5B7 111 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 ZNF785A8K8V0 405 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 SAP30O75446 220 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 RNASE2P10153 161 aaKnown RBP8.99□□□□□ -0.97
CLN3-244ENST00000636147 SFTA2Q6UW10 78 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 GTSF1LQ9H1H1 148 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 NCBP2LA6PVI3 153 aaKnown RBP8.99□□□□□ -0.97
CLN3-244ENST00000636147 C9orf172C9J069 976 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 CD5LO43866 347 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 SCGB2A1O75556 95 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 RNFT1Q5M7Z0 435 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 ZADH2Q8N4Q0 377 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 OSR1Q8TAX0 266 aaPredicted RBP8.99□□□□□ -0.97
CLN3-244ENST00000636147 Q8TCH9 128 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 CHCHD1Q96BP2 118 aaKnown RBP8.99□□□□□ -0.97
CLN3-244ENST00000636147 LAMA1P25391 3075 aa8.99□□□□□ -0.97
CLN3-244ENST00000636147 PIEZO2Q9H5I5 2752 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 A0A0G2JLM5 398 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 MMP23AO75900 390 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 RBX1P62877 108 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 ZNF329Q86UD4 541 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 PRR7Q8TB68 274 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 SCNM1Q9BWG6 230 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 NHP2Q9NX24 153 aaKnown RBP8.98□□□□□ -0.97
CLN3-244ENST00000636147 CGB1A6NKQ9 187 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 SMIM13P0DJ93 91 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 SAMD13Q5VXD3 122 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 PRSS57Q6UWY2 283 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 NEUROG1Q92886 237 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 KLK15Q9H2R5 256 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms