RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 RBMY1FQ15415 496 aaKnown RBP9.86□□□□□ -0.83
TRIM28-211ENST00000597968 ACTL10Q5JWF8 245 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 SAMD13Q5VXD3 122 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 SIGLEC15Q6ZMC9 328 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 CLUHP3Q96NS8 147 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 NEU1Q99519 415 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 HSPB7Q9UBY9 170 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 SHPKQ9UHJ6 478 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 TMEM189A5PLL7 270 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 FABP12A6NFH5 140 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 FAM90A26D6RGX4 464 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 DEFB4AO15263 64 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 FABP1P07148 127 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 ANXA3P12429 323 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 C4BPBP20851 252 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 HLA-DMBP28068 263 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 GPX4P36969 197 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-211ENST00000597968 NKX2-1P43699 371 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-211ENST00000597968 USF2Q15853 346 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-211ENST00000597968 PSMG4Q5JS54 123 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 SPATA31B1PQ5VZV4 182 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 OR51G1Q8NGK1 321 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 MCFD2Q8NI22 146 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 NPIPB3Q92617 1050 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 MCUBQ9NWR8 336 aa9.85□□□□□ -0.83
TRIM28-211ENST00000597968 RSL24D1Q9UHA3 163 aaKnown RBP9.85□□□□□ -0.83
TRIM28-211ENST00000597968 HERC2O95714 4834 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 TEX48A0A1B0GUV7 120 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 DUXBA0A1W2PPF3 345 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 SMIM9A6NGZ8 99 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 KNCNA6PVL3 124 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 IFNA10P01566 189 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 AMBPP02760 352 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 SMCO1Q147U7 214 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 C1orf194Q5T5A4 169 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 LINC00336Q6ZUF6 198 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 DTD1Q8TEA8 209 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 TMEM170AQ8WVE7 144 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 RNF125Q96EQ8 232 aa9.84□□□□□ -0.83
TRIM28-211ENST00000597968 ELOA3CA0A087WX78 387 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-211ENST00000597968 H3BMM0 161 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 NOL3O60936 208 aaKnown RBP9.83□□□□□ -0.84
TRIM28-211ENST00000597968 CFDP00746 253 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-211ENST00000597968 PSG1P11464 419 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 HLA-DRB4P13762 266 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 AKR1C4P17516 323 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 ID1P41134 155 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 KLF9Q13886 244 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-211ENST00000597968 Q6ZTC4 211 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 LGI3Q8N145 548 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 DEDD2Q8WXF8 326 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 FAM210BQ96KR6 192 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 HLA-DRB4X5D2U9 266 aa9.83□□□□□ -0.84
TRIM28-211ENST00000597968 IGHV4-4A0A075B6R2 117 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 P0DMU3 169 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 FAM231AP0DMU4 169 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 FAM231CP0DMU5 169 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 SUPT4H1P63272 117 aaKnown RBP9.82□□□□□ -0.84
TRIM28-211ENST00000597968 PRR20EP86478 221 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 PRR20CP86479 221 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 PRR20DP86480 221 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 PRR20BP86481 221 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 PRR20AP86496 221 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 ZNF705AQ6ZN79 300 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-211ENST00000597968 LYZL2Q7Z4W2 148 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 ACY3Q96HD9 319 aa9.82□□□□□ -0.84
TRIM28-211ENST00000597968 SNRPGP15A8MWD9 76 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 SLC25A6P12236 298 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 S100A7P31151 101 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 FAUP35544 74 aaKnown RBP9.81□□□□□ -0.84
TRIM28-211ENST00000597968 PSMB3P49720 205 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 RAB11AP62491 216 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 PYDC2Q56P42 97 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 FOXI2Q6ZQN5 318 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 SLC35E1Q96K37 410 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 SLC45A2Q9UMX9 530 aa9.81□□□□□ -0.84
TRIM28-211ENST00000597968 DEFB131BA0A096LNP1 70 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 CCDC160A6NGH7 325 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 ZFP92A6NM28 416 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 ZNF705FA8MVS1 300 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-211ENST00000597968 ZNF705DP0CH99 300 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-211ENST00000597968 ZNF705BP0CI00 300 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-211ENST00000597968 MEOX2P50222 304 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 GAMTQ14353 236 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 C12orf74Q32Q52 190 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 TMEM128Q5BJH2 165 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 NDUFAF3Q9BU61 184 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 SAV1Q9H4B6 383 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-211ENST00000597968 CLEC5AQ9NY25 188 aa9.8□□□□□ -0.84
TRIM28-211ENST00000597968 ISLRO14498 428 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 SPART-AS1P0CW21 52 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 PAX9P55771 341 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 AP3S2P59780 193 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 RPP30P78346 268 aaKnown RBP9.79□□□□□ -0.84
TRIM28-211ENST00000597968 OXA1LQ15070 435 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 ZNF79Q15937 498 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 TMED4Q7Z7H5 227 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 LRTM2Q8N967 370 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 TRIM63Q969Q1 353 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 CIB3Q96Q77 187 aaPredicted RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms