RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 DEFB125Q8N687 156 aa11.25□□□□□ -0.61
UPF1-202ENST00000594243 THAP8Q8NA92 274 aa11.25□□□□□ -0.61
UPF1-202ENST00000594243 ASCL2Q99929 193 aa11.25□□□□□ -0.61
UPF1-202ENST00000594243 PFDN2Q9UHV9 154 aa11.25□□□□□ -0.61
UPF1-202ENST00000594243 RABAC1Q9UI14 185 aa11.25□□□□□ -0.61
UPF1-202ENST00000594243 IGHV3-66A0A0C4DH42 116 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 GOSR2O14653 212 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 DFFBO76075 338 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 PTTG1O95997 202 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 METTL15P1P0C7V9 234 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 EIF2B2P49770 351 aaKnown RBP11.24□□□□□ -0.61
UPF1-202ENST00000594243 BCAP31P51572 246 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 RPL11P62913 178 aaKnown RBP11.24□□□□□ -0.61
UPF1-202ENST00000594243 CYCSP99999 105 aaKnown RBP11.24□□□□□ -0.61
UPF1-202ENST00000594243 ZNF90Q03938 601 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 AKR1C1Q04828 323 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 IL15RAQ13261 267 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 USF2Q15853 346 aaPredicted RBP11.24□□□□□ -0.61
UPF1-202ENST00000594243 ACOT7LQ6ZUV0 252 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 TMEM144Q7Z5S9 345 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 SBSPONQ8IVN8 264 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 RNF125Q96EQ8 232 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 NPVFQ9HCQ7 196 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 U3KQE9 123 aa11.24□□□□□ -0.61
UPF1-202ENST00000594243 IGKV3-7A0A075B6H7 116 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 IGKV1OR2-108A0A075B7D4 117 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 SMCO3A2RU48 225 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 FNDC10F2Z333 226 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 SSNA1O43805 119 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 P2RY1P47900 373 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 AP2S1P53680 142 aaPredicted RBP11.23□□□□□ -0.61
UPF1-202ENST00000594243 S100A10P60903 97 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 DLK1P80370 383 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 RAB32Q13637 225 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 LILRB2Q8N423 598 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 FAM110AQ9BQ89 295 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 PBDC1Q9BVG4 233 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 GGACTQ9BVM4 153 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 NMES1Q9C002 83 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 SRD5A3Q9H8P0 318 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 MGAT4CQ9UBM8 478 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 SORL1Q92673 2214 aa11.23□□□□□ -0.61
UPF1-202ENST00000594243 TRAV2A0A0B4J234 112 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 HELTA6NFD8 242 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 DNASE2O00115 360 aaPredicted RBP11.22□□□□□ -0.61
UPF1-202ENST00000594243 RLN2P04090 185 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 NUP62P37198 522 aaPredicted RBP11.22□□□□□ -0.61
UPF1-202ENST00000594243 TFPI2P48307 235 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 CAV2P51636 162 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 RRAS2P62070 204 aaPredicted RBP11.22□□□□□ -0.61
UPF1-202ENST00000594243 C16orf54Q6UWD8 224 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 GBGT1Q8N5D6 347 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 MS4A6AQ9H2W1 248 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 ZMAT4Q9H898 229 aa11.22□□□□□ -0.61
UPF1-202ENST00000594243 BUB3O43684 328 aa11.21□□□□□ -0.61
UPF1-202ENST00000594243 CCNKO75909 580 aa11.21□□□□□ -0.61
UPF1-202ENST00000594243 SIX6O95475 246 aa11.21□□□□□ -0.61
UPF1-202ENST00000594243 OR2F1Q13607 317 aa11.21□□□□□ -0.61
UPF1-202ENST00000594243 LINC00322Q6ZN03 302 aaPredicted RBP11.21□□□□□ -0.61
UPF1-202ENST00000594243 BPIFCQ8NFQ6 507 aa11.21□□□□□ -0.61
UPF1-202ENST00000594243 WFDC10AQ9H1F0 79 aa11.21□□□□□ -0.61
UPF1-202ENST00000594243 C11orf1Q9H5F2 150 aa11.21□□□□□ -0.61
UPF1-202ENST00000594243 UBQLN2Q9UHD9 624 aa11.21□□□□□ -0.61
UPF1-202ENST00000594243 DEDDO75618 318 aa11.2□□□□□ -0.62
UPF1-202ENST00000594243 S100A7P31151 101 aa11.2□□□□□ -0.62
UPF1-202ENST00000594243 LYZP61626 148 aa11.2□□□□□ -0.62
UPF1-202ENST00000594243 TEPPQ6URK8 271 aa11.2□□□□□ -0.62
UPF1-202ENST00000594243 WFDC3Q8IUB2 231 aa11.2□□□□□ -0.62
UPF1-202ENST00000594243 LYRM2Q9NU23 88 aaPredicted RBP11.2□□□□□ -0.62
UPF1-202ENST00000594243 FAM24AA6NFZ4 105 aa11.19□□□□□ -0.62
UPF1-202ENST00000594243 SELENOTP62341 195 aa11.19□□□□□ -0.62
UPF1-202ENST00000594243 HAGHQ16775 308 aa11.19□□□□□ -0.62
UPF1-202ENST00000594243 CYP2G1PQ6ZSU1 146 aa11.19□□□□□ -0.62
UPF1-202ENST00000594243 GLMPQ8WWB7 406 aa11.19□□□□□ -0.62
UPF1-202ENST00000594243 TM2D3Q9BRN9 247 aa11.19□□□□□ -0.62
UPF1-202ENST00000594243 SLC45A2Q9UMX9 530 aa11.19□□□□□ -0.62
UPF1-202ENST00000594243 U3KQK5 164 aa11.19□□□□□ -0.62
UPF1-202ENST00000594243 LOC102724200A0A096LPH7 203 aaPredicted RBP11.18□□□□□ -0.62
UPF1-202ENST00000594243 RBMY1BA6NDE4 496 aaKnown RBP11.18□□□□□ -0.62
UPF1-202ENST00000594243 RBMY1EA6NEQ0 496 aaKnown RBP11.18□□□□□ -0.62
UPF1-202ENST00000594243 E5RGE8 158 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 RBMY1DP0C7P1 496 aaKnown RBP11.18□□□□□ -0.62
UPF1-202ENST00000594243 S100A11P31949 105 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 SULT1A1P50225 295 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 SLC38A11Q08AI6 406 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 ARL16Q0P5N6 197 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 ODF3L2Q3SX64 289 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 C1orf194Q5T5A4 169 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 SIGLEC15Q6ZMC9 328 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 STX12Q86Y82 276 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 TMEM252Q8N6L7 170 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 STXBP6Q8NFX7 210 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 PPP1R14BQ96C90 147 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 FBXL17Q9UF56 701 aa11.18□□□□□ -0.62
UPF1-202ENST00000594243 CST7O76096 145 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 ORM2P19652 201 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 GATA2P23769 480 aaPredicted RBP11.17□□□□□ -0.62
UPF1-202ENST00000594243 H2BFSP57053 126 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 HBG1P69891 147 aa11.17□□□□□ -0.62
UPF1-202ENST00000594243 HBG2P69892 147 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms