RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MT-ND6P03923 174 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 ZNF25P17030 456 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-213ENST00000552720 CD24P25063 80 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 LOXP28300 417 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-213ENST00000552720 MEF2CQ06413 473 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-213ENST00000552720 MAJINQ3KP22 176 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 Q71RC1 249 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-213ENST00000552720 OR1B1Q8NGR6 318 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 C18orf32Q8TCD1 76 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 TSKUQ8WUA8 353 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 MBD6Q96DN6 1003 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 TMEM68Q96MH6 324 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 PTPRZ1P23471 2315 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-213ENST00000552720 C16orf97H3BN30 126 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 NDUFB3O43676 98 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 HLA-DQA1P01909 254 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 C3orf79P0CE67 100 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 TFPI2P48307 235 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 CAMPP49913 170 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 OR10J3Q5JRS4 329 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 LCN12Q6JVE5 192 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 LINC00322Q6ZN03 302 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-213ENST00000552720 PDPNQ86YL7 162 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 SPACA3Q8IXA5 215 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 CLUHP3Q96NS8 147 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 ZNF331Q9NQX6 463 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-213ENST00000552720 ZNF586Q9NXT0 402 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 WASHC3Q9Y3C0 194 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 CELSR1Q9NYQ6 3014 aa6.02□□□□□ -1.45
LIMA1-213ENST00000552720 ZFHX3Q15911 3703 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 MUC6Q6W4X9 2439 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 LYNX1G3V0Z9 82 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 ZNF324O75467 553 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-213ENST00000552720 LYNX1P0DP58 116 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 ATP5IP56385 69 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-213ENST00000552720 TMEM30BQ3MIR4 351 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 C11orf42Q8N5U0 333 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 PRSS33Q8NF86 280 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 C7orf69Q9H7B7 122 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 IGLC7A0M8Q6 106 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 PGPA6NDG6 321 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 HIGD1CA8MV81 97 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 TNFRSF13BO14836 293 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-213ENST00000552720 CRYABP02511 175 aaKnown RBP6.01□□□□□ -1.45
LIMA1-213ENST00000552720 FAM87AP0C7U9 286 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 MYCNOSP40205 109 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 CTRLP40313 264 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 DLX6P56179 175 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 TNXAQ16473 311 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 TBR1Q16650 682 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 SPATA45Q537H7 98 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 TCF24Q7RTU0 167 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 THAP8Q8NA92 274 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 OR1L4Q8NGR5 311 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 IGFBPL1Q8WX77 278 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 TMEM186Q96B77 213 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 TNFRSF19Q9NS68 423 aa6.01□□□□□ -1.45
LIMA1-213ENST00000552720 INS-IGF2F8WCM5 200 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 M0QZ24 198 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 TOX4O94842 621 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 SLC25A5P05141 298 aaKnown RBP6□□□□□ -1.45
LIMA1-213ENST00000552720 IGHV1-8P0DP01 117 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 PRR30Q53SZ7 412 aaPredicted RBP6□□□□□ -1.45
LIMA1-213ENST00000552720 LRRC10Q5BKY1 277 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 KIR3DL3Q8N743 410 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 VSTM2AQ8TAG5 236 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 RNASE6Q93091 150 aaKnown RBP6□□□□□ -1.45
LIMA1-213ENST00000552720 RNF2Q99496 336 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 ASCL2Q99929 193 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 WNK2Q9Y3S1 2297 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 ANKHD1Q8IWZ3 2542 aaKnown RBP6□□□□□ -1.45
LIMA1-213ENST00000552720 SH2D7A6NKC9 451 aaPredicted RBP6□□□□□ -1.45
LIMA1-213ENST00000552720 SUB1P53999 127 aaKnown RBP eCLIP6□□□□□ -1.45
LIMA1-213ENST00000552720 UBE2G1P62253 170 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 RPL19P84098 196 aaKnown RBP6□□□□□ -1.45
LIMA1-213ENST00000552720 MMDQ15546 238 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 VMA21Q3ZAQ7 101 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 IGF2-ASQ6U949 168 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 ABHD17AQ96GS6 310 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 TMEM208Q9BTX3 173 aa6□□□□□ -1.45
LIMA1-213ENST00000552720 SPTA1P02549 2419 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 TRAV8-1A0A0A6YYK1 113 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 E7EQL1 145 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 PRRG2O14669 202 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 RPLP1P05386 114 aaKnown RBP5.99□□□□□ -1.45
LIMA1-213ENST00000552720 NPSP0C0P6 89 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 PRRX1P54821 245 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 PMCHL1Q16048 86 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 TMEM155Q4W5P6 130 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 FAM231DQ6ZW35 169 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 SPATA12Q7Z6I5 190 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 LINC00311Q8N616 119 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 OR2D3Q8NGH3 330 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 OR4A5Q8NH83 315 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 GRAMD2BQ96HH9 432 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 CLEC7AQ9BXN2 247 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 LPAR2Q9HBW0 351 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 TP73-AS1Q9UF72 201 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 EPDR1Q9UM22 224 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 NBEAP1P0C6P0 100 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms