RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MYOD1P15172 320 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 CEACAM8P31997 349 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-203ENST00000547825 MPV17P39210 176 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 PAX9P55771 341 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 UBE2V1Q13404 147 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 OR13A1Q8NGR1 328 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 ZC2HC1AQ96GY0 325 aa4.52□□□□□ -1.69
LIMA1-203ENST00000547825 MYO18BQ8IUG5 2567 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 IGHV3OR16-8A0A075B7F1 116 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 TRAV9-2A0A087WT02 112 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 TRAV8-6A0A0B4J262 113 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 TGFAP01135 160 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 CCL1P22362 96 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 TSPOP30536 169 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 HSPE1P61604 102 aaKnown RBP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 SRSF9Q13242 221 aaKnown RBP eCLIP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 Q8NFD4 153 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 FER1L6-AS2Q96M78 137 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 CLEC7AQ9BXN2 247 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 CXXC4Q9H2H0 198 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 PEF1Q9UBV8 284 aaKnown RBP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 DSCAML1Q8TD84 2053 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 TRAV1-1A0A0B4J248 108 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 IGKV1-6A0A0C4DH72 117 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 A0A1B0GW64 132 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 C7orf71A4D174 169 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 NKX6-3A6NJ46 265 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 HYPMO75409 117 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 TNFSF15O95150 251 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 GPX1P07203 203 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 FBXW9Q5XUX1 488 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 CCDC144NLQ6NUI1 221 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 GOLT1AQ6ZVE7 132 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 ZIC4Q8N9L1 334 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 OR4F17Q8NGA8 305 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 RNASE8Q8TDE3 154 aaKnown RBP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 OR5P3Q8WZ94 311 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 TMEM54Q969K7 222 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 SLC25A10Q9UBX3 287 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 ANAPC10Q9UM13 185 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 MALRD1Q5VYJ5 2156 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 OR2T8A6NH00 312 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 NCBP2LA6PVI3 153 aaKnown RBP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 COL8A2P25067 703 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 S100A4P26447 101 aaKnown RBP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 IL11RAQ14626 422 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 RNPS1Q15287 305 aaKnown RBP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 EFNB3Q15768 340 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 SP5Q6BEB4 398 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-203ENST00000547825 OR2M7Q8NG81 312 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 OR9G1Q8NH87 305 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 ASCL2Q99929 193 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 AGMATQ9BSE5 352 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 GTSF1LQ9H1H1 148 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 AAMDCQ9H7C9 122 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 PPP1R14DQ9NXH3 145 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 PROCRQ9UNN8 238 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 SPCS1Q9Y6A9 102 aa4.51□□□□□ -1.69
LIMA1-203ENST00000547825 CELSR1Q9NYQ6 3014 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 CSPG4Q6UVK1 2322 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 PTPRQQ9UMZ3 2332 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 TRAV3A0A0B4J244 114 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 A0A1B0GWJ7 208 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 APOHP02749 345 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 ADH4P08319 380 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 OR9G9P0C7N8 305 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 CKS2P33552 79 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 TNFAIP6P98066 277 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 RIGQ13278 110 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 RSPO1Q2MKA7 263 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 VMA21Q3ZAQ7 101 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 TMEM97Q5BJF2 176 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 LYPD6BQ8NI32 183 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 CT55Q8WUE5 264 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 TXNDC17Q9BRA2 123 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 GAL3ST2Q9H3Q3 398 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 RALYQ9UKM9 306 aaKnown RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 GAGE12BA1L429 117 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 FAM90A10PA6NDY2 464 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 FAM90A8PA6NJQ4 464 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 SLC25A17O43808 307 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 SCGB2A1O75556 95 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 CRYABP02511 175 aaKnown RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 FAM90A13PP0C7W8 464 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 FAM90A24PP0C7X0 464 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 DNLZQ5SXM8 178 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 OR1L8Q8NGR8 309 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 KLF14Q8TD94 323 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 NABP1Q96AH0 204 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 PRNDQ9UKY0 176 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 SONP18583 2426 aaKnown RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 MED12LQ86YW9 2145 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 IGHV3OR16-13A0A075B7E8 117 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 IGHV3-74A0A0B4J1X5 117 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 C9orf118A6NHY6 69 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 WT1P19544 449 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 GPR183P32249 361 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 TWIST1Q15672 202 aa4.5□□□□□ -1.69
LIMA1-203ENST00000547825 BHLHA15Q7RTS1 189 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-203ENST00000547825 ZNF441Q8N8Z8 693 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms