RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TRAV34A0A0B4J273 112 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 NDUFA3O95167 84 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 IGLC1P0CG04 106 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 MGST1P10620 155 aaKnown RBP12.94□□□□□ -0.34
COL4A1-204ENST00000543140 ZNF329Q86UD4 541 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 LPAR2Q9HBW0 351 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 LY96Q9Y6Y9 160 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 MAP1AP78559 2803 aaPredicted RBP12.93□□□□□ -0.34
COL4A1-204ENST00000543140 FABP4P15090 132 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 OR10D4PQ8NGN7 298 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 SIRPDQ9H106 197 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 XKRY2A2RUG3 117 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 TOX4O94842 621 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 GNG5P63218 68 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 PAX2Q02962 417 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 KIR3DL3Q8N743 410 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 SPG11Q96JI7 2443 aa12.93□□□□□ -0.34
COL4A1-204ENST00000543140 K7EIM0 57 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 IGLV2-8P01709 118 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 CX3CL1P78423 397 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 CCDC144NLQ6NUI1 221 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 RASL11BQ9BPW5 248 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 IL36BQ9NZH7 164 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 PITPNC1Q9UKF7 332 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 TRAPPC1Q9Y5R8 145 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 V9GYV3 84 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 IGHV2-70DA0A0C4DH43 119 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 SGK494Q96LW2 274 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 IGF2BP2-AS1Q96M15 143 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 RPH3ALQ9UNE2 315 aa12.92□□□□□ -0.34
COL4A1-204ENST00000543140 IGKV1-17P01599 117 aa12.91□□□□□ -0.34
COL4A1-204ENST00000543140 RPL15P61313 204 aaKnown RBP12.91□□□□□ -0.34
COL4A1-204ENST00000543140 LMO4P61968 165 aa12.91□□□□□ -0.34
COL4A1-204ENST00000543140 C9orf152Q5JTZ5 239 aa12.91□□□□□ -0.34
COL4A1-204ENST00000543140 RBM14Q96PK6 669 aaKnown RBP12.91□□□□□ -0.34
COL4A1-204ENST00000543140 NBEAP1P0C6P0 100 aa12.91□□□□□ -0.34
COL4A1-204ENST00000543140 NDPQ00604 133 aa12.91□□□□□ -0.34
COL4A1-204ENST00000543140 PYY3Q5JQD4 70 aa12.91□□□□□ -0.34
COL4A1-204ENST00000543140 SRSF8Q9BRL6 282 aaKnown RBP12.91□□□□□ -0.34
COL4A1-204ENST00000543140 HIGD1AQ9Y241 93 aa12.91□□□□□ -0.34
COL4A1-204ENST00000543140 PEX7O00628 323 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 FRMD6-AS1P0C7T7 363 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 CNN1P51911 297 aaKnown RBP12.9□□□□□ -0.34
COL4A1-204ENST00000543140 RPEL1Q2QD12 228 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 STXBP6Q8NFX7 210 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 TBX15Q96SF7 602 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 USP9XQ93008 2570 aaPredicted RBP12.9□□□□□ -0.34
COL4A1-204ENST00000543140 PGPA6NDG6 321 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 ISLRO14498 428 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 SPINK4O60575 86 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 IGHV4-39P01824 125 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 TMEM11P17152 192 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 FAM120AOSQ5T036 256 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 MINOS1Q5TGZ0 78 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 OR8I2Q8N0Y5 310 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 ARPC1AQ92747 370 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 CDC42EP3Q9UKI2 254 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 MINOS1-NBL1R4GNA1 71 aa12.9□□□□□ -0.34
COL4A1-204ENST00000543140 UTP20O75691 2785 aaKnown RBP12.89□□□□□ -0.35
COL4A1-204ENST00000543140 GCGP01275 180 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 SLC25A5P05141 298 aaKnown RBP12.89□□□□□ -0.35
COL4A1-204ENST00000543140 GP9P14770 177 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 PLP1P60201 277 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 ZNF562Q6V9R5 426 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 TMEM183AQ8IXX5 376 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 SERTAD4Q9NUC0 356 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 OVOL3O00110 214 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 CBLN1P23435 193 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 MYCNOSP40205 109 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 TCL1AP56279 114 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 SLC35B1P78383 322 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 HIST1H2BLQ99880 126 aa12.89□□□□□ -0.35
COL4A1-204ENST00000543140 ABCA2Q9BZC7 2435 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 IBA57Q5T440 356 aaKnown RBP12.88□□□□□ -0.35
COL4A1-204ENST00000543140 ZNF600Q6ZNG1 722 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 Q8N6K4 173 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 BTF3L4Q96K17 158 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 SLC25A39Q9BZJ4 359 aaPredicted RBP12.88□□□□□ -0.35
COL4A1-204ENST00000543140 MYO18BQ8IUG5 2567 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 OOSP1A8MZH6 123 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 CA1P00915 261 aaPredicted RBP12.88□□□□□ -0.35
COL4A1-204ENST00000543140 SAA4P35542 130 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 VPS13CQ709C8 3753 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 BAGE2Q86Y30 109 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 FANCD2OSQ96PS1 177 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 CELSR1Q9NYQ6 3014 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 EPDR1Q9UM22 224 aa12.88□□□□□ -0.35
COL4A1-204ENST00000543140 ZFYVE26Q68DK2 2539 aa12.87□□□□□ -0.35
COL4A1-204ENST00000543140 HIST1H1BP16401 226 aaKnown RBP12.87□□□□□ -0.35
COL4A1-204ENST00000543140 TAS2R60P59551 318 aa12.87□□□□□ -0.35
COL4A1-204ENST00000543140 OSTCQ9NRP0 149 aa12.87□□□□□ -0.35
COL4A1-204ENST00000543140 IGHV3-23P01764 117 aa12.87□□□□□ -0.35
COL4A1-204ENST00000543140 UBE2E1P51965 193 aa12.87□□□□□ -0.35
COL4A1-204ENST00000543140 AJUBAQ96IF1 538 aa12.87□□□□□ -0.35
COL4A1-204ENST00000543140 PACRGQ96M98 296 aaPredicted RBP12.87□□□□□ -0.35
COL4A1-204ENST00000543140 A0A1B0GUS0 222 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 ADMP35318 185 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 IER3P46695 156 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 EBI3Q14213 229 aa12.86□□□□□ -0.35
COL4A1-204ENST00000543140 PRR27Q6MZM9 219 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms