RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 TNFRSF19Q9NS68 423 aa10.14□□□□□ -0.79
SFSWAP-208ENST00000539506 AMMECR1Q9Y4X0 333 aaPredicted RBP10.14□□□□□ -0.79
SFSWAP-208ENST00000539506 DLX1P56177 255 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 BSPH1Q075Z2 132 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 TMEM200BQ69YZ2 307 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 LYPD2Q6UXB3 125 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 C11orf52Q96A22 123 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 ADTRPQ96IZ2 230 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 COX11Q9Y6N1 276 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 NUDT3O95989 172 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 CRYABP02511 175 aaKnown RBP10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 OR10J3Q5JRS4 329 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 ZNF833PQ6ZTB9 187 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 ZNF738Q8NE65 137 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 OR5B3Q8NH48 314 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 PGLYRP4Q96LB8 373 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 GSX1Q9H4S2 264 aaPredicted RBP10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 SLC25A10Q9UBX3 287 aaPredicted RBP10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 PRNDQ9UKY0 176 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 A0A1W2PRD5 423 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 A0A1W2PRF3 423 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 A0A1W2PRM7 423 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 OR2T8A6NH00 312 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 NKX6-3A6NJ46 265 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 C17orf100A8MU93 164 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 MOSP00540 346 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 FBLN7Q53RD9 439 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 LINC00322Q6ZN03 302 aaPredicted RBP10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 SSX8Q7RTT4 187 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 NPIPB3Q92617 1050 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 MRPL36Q9P0J6 103 aaKnown RBP10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 ZNF257Q9Y2Q1 563 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 LINC00312Q9Y6C7 94 aa10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 ASH1LQ9NR48 2969 aaKnown RBP10.13□□□□□ -0.79
SFSWAP-208ENST00000539506 NBASA2RRP1 2371 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 HLA-DQA1P01909 254 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 RNASE2P10153 161 aaKnown RBP10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 TNFSF4P23510 183 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 UBE2V1Q13404 147 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 C22orf15Q8WYQ4 148 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 ABHD17AQ96GS6 310 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 TXNDC17Q9BRA2 123 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 OSTCQ9NRP0 149 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 TMEM167BQ9NRX6 74 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 hADV38S2A0JD32 116 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 IZUMO1RA6ND01 250 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 CGB1A6NKQ9 187 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 PPOXP50336 477 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 KLHDC1Q8N7A1 406 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 Q8NA96 180 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 SLC25A33Q9BSK2 321 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 RAB9BQ9NP90 201 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 WNK2Q9Y3S1 2297 aa10.12□□□□□ -0.79
SFSWAP-208ENST00000539506 IGHV3-72A0A0B4J1Y9 119 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 SMIM27A0A1W2PRY6 76 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 H0YJW9 148 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 C16orf97H3BN30 126 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 C8orf88P0DMB2 117 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 PSG1P11464 419 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 FXYD7P58549 80 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 UBE2G1P62253 170 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 LDLRAD2Q5SZI1 272 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 TMEM108Q6UXF1 575 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 RITA1Q96K30 269 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 APC2O95996 2303 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 CEP295Q9C0D2 2601 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 TRAV8-1A0A0A6YYK1 113 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 OR4C46A6NHA9 309 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 RTL8BQ17RB0 113 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 HCP5Q6MZN7 132 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 ZNF596Q8TC21 504 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 IGF2BP2-AS1Q96M15 143 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 TPPP3Q9BW30 176 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 SLC25A2Q9BXI2 301 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 TRAV9-2A0A087WT02 112 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 A0A087X0K7 114 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 MUC21A0A0G2JKD1 596 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 MUC21A0A140T8X8 626 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 TNFRSF13BO14836 293 aaPredicted RBP10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 MT-ND6P03923 174 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 C2orf83Q53S99 150 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 MUC21Q5SSG8 566 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 PRSS33Q8NF86 280 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 CCL17Q92583 94 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 URB1-AS1Q96HZ7 61 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 NDUFA4L2Q9NRX3 87 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 CTSZQ9UBR2 303 aa10.11□□□□□ -0.79
SFSWAP-208ENST00000539506 COX7A2P2O60397 106 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 OR4F17Q8NGA8 305 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 HARBI1Q96MB7 349 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 VPS25Q9BRG1 176 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 TRBV9A0A0B4J1U6 114 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 FNDC10F2Z333 226 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 TMEM178BH3BS89 294 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 TBR1Q16650 682 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 PRR30Q53SZ7 412 aaPredicted RBP10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 AMMECR1LQ6DCA0 310 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 OR5AN1Q8NGI8 311 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 PAXXQ9BUH6 204 aa10.1□□□□□ -0.79
SFSWAP-208ENST00000539506 PGPA6NDG6 321 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms