RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ZNF3P17036 446 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 ERP29P30040 261 aaKnown RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 PFN2P35080 140 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 OR1E2P47887 323 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 HADHBP55084 474 aaKnown RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 DEFB131AP59861 70 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 LTC4SQ16873 150 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 TPRXLQ17RH7 258 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF829Q3KNS6 432 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 IGFL1Q6UW32 110 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF705AQ6ZN79 300 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 RXFP4Q8TDU9 374 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 GHSRQ92847 366 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 KCNS1Q96KK3 526 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 LINC00477Q96M19 166 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 RTBDNQ9BSG5 229 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 PBOV1Q9GZY1 135 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 HES4Q9HCC6 221 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 RRAGDQ9NQL2 400 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 MRPL22Q9NWU5 206 aaKnown RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF229Q9UJW7 825 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 POLR1DQ9Y2S0 133 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 MPC1Q9Y5U8 109 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 IGKV3-7A0A075B6H7 116 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 A0A0B4J2E0 115 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 A0A0J9YY99 117 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 A0A1B0GX12 115 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 SMIM9A6NGZ8 99 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 SLC16A7O60669 478 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 NOS1APO75052 506 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-210ENST00000471439 ATP5G1P05496 136 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 CD5P06127 495 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 RPS17P08708 135 aaKnown RBP2.05□□□□□ -2.08
VPS13A-210ENST00000471439 DEFB130BP0DP73 79 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 DEFB130AP0DP74 79 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 SLC2A1P11166 492 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 CELP19835 753 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 SPRR2EP22531 72 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 SPRR2BP35325 72 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 SPRR2AP35326 72 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 TALDO1P37837 337 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 ATP5G3P48201 142 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 ATP5G2Q06055 141 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 IMPG1Q17R60 797 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 SLC25A34Q6PIV7 304 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF664Q8N3J9 261 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 GRPEL2Q8TAA5 225 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.05□□□□□ -2.08
VPS13A-210ENST00000471439 SLC25A46Q96AG3 418 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 RMI2Q96E14 147 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 NAA50Q9GZZ1 169 aaKnown RBP2.05□□□□□ -2.08
VPS13A-210ENST00000471439 COA4Q9NYJ1 87 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 STK38LQ9Y2H1 464 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 LY96Q9Y6Y9 160 aa2.05□□□□□ -2.08
VPS13A-210ENST00000471439 IGHV7-4-1A0A0J9YVY3 117 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF729A6NN14 1252 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-210ENST00000471439 KNCNA6PVL3 124 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 KPNA4O00629 521 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-210ENST00000471439 TAAR5O14804 337 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 XRCC2O43543 280 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 RBBP9O75884 186 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF688P0C7X2 276 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 STAG3L3P0CL85 134 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 MAGEA12P43365 314 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 LGALS7P47929 136 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 CLDN8P56748 225 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 GNG3P63215 75 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 RHOGP84095 191 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 PLGLAQ15195 96 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 KDM4DQ6B0I6 523 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 PLEKHG7Q6ZR37 379 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 C3orf62Q6ZUJ4 267 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 NEGR1Q7Z3B1 354 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 MICU2Q8IYU8 434 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 LRRC34Q8IZ02 419 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 CLECL1Q8IZS7 167 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 GPX8Q8TED1 209 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 GLYATL2Q8WU03 294 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 REEP6Q96HR9 211 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 OPALINQ96PE5 141 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 GPR22Q99680 433 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 HINT2Q9BX68 163 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 RERGLQ9H628 205 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 RBFOX1Q9NWB1 397 aaKnown RBP2.04□□□□□ -2.08
VPS13A-210ENST00000471439 IDI2-AS1Q9NZ38 188 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 TFR2Q9UP52 801 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 SAR1BQ9Y6B6 198 aa2.04□□□□□ -2.08
VPS13A-210ENST00000471439 TRAV5A0A0B4J249 113 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 ODAMA1E959 279 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 TNFRSF11BO00300 401 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 ISLRO14498 428 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 CDRT1O95170 752 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 SOX14O95416 240 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 CA2P00918 260 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 PRH1P02810 166 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 GLAP06280 429 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 APELAP0DMC3 54 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 PRKCDQ05655 676 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 FXYD3Q14802 87 aa2.03□□□□□ -2.08
VPS13A-210ENST00000471439 SS18Q15532 418 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 244.3 ms