RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TNFRSF9Q07011 255 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 BSXQ3C1V8 233 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 SLC25A48Q6ZT89 311 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 CUL9Q8IWT3 2517 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 SRRM4A7MD48 611 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 FSHBP01225 129 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 PNRC1Q12796 327 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 FOXE3Q13461 319 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 S100A7L2Q5SY68 101 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 NABP2Q9BQ15 211 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 DUSP21Q9H596 190 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 TRAV34A0A0B4J273 112 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 CRLF1O75462 422 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 Q6ZNX1 250 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 SMR3AQ99954 134 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 SLC25A39Q9BZJ4 359 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 RBMY1BA6NDE4 496 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 RBMY1EA6NEQ0 496 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 FGF16O43320 207 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 RBMY1DP0C7P1 496 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 RBMY1A1P0DJD3 496 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 RBMY1CP0DJD4 496 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 GALP22466 123 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 GCSAMLQ5JQS6 135 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 PRELID3AQ96N28 172 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 EDA2RQ9HAV5 297 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 C17orf98A8MV24 154 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 FSTP19883 344 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 RPL24P83731 157 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 CD177Q8N6Q3 437 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 NKAPP1Q8N9T2 125 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 PGLYRP4Q96LB8 373 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 NDUFAF3Q9BU61 184 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 PDCD11Q14690 1871 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 PCP4P48539 62 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 JOSD1Q15040 202 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 CFHR4Q92496 578 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 MRPL27Q9P0M9 148 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 HOXB4P17483 251 aaPredicted RBP7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 RPL29P47914 159 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 SLURP1P55000 103 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 DEFB135Q30KP9 77 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 FAM74A3Q4VXF1 159 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 FAM131CQ96AQ9 280 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 GPR146Q96CH1 333 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 FANCD2OSQ96PS1 177 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 LGALS1P09382 135 aaKnown RBP7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 OR5A1Q8NGJ0 315 aa7.48□□□□□ -1.21
LIMCH1-202ENST00000381753 KNCNA6PVL3 124 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 UCP3P55916 312 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 TP53RKQ96S44 253 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 VAX2Q9UIW0 290 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 SCN2AQ99250 2005 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 SNRNP200O75643 2136 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 GRIFINA4D1Z8 144 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 LDLRAD4O15165 306 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 NBEAP1P0C6P0 100 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 AZU1P20160 251 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 C9orf139Q6ZV77 190 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 FAM89BQ8N5H3 189 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 FXYD1O00168 92 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 SPRY2O43597 315 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 SPSB4Q96A44 273 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 TMEM222Q9H0R3 208 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 CTXND1A0A1B0GTU2 59 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 LRCOL1A6NCL2 159 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 RBFOX3A6NFN3 312 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 CD74P04233 296 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 FHITP49789 147 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 NANOS3P60323 173 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 ODF1Q14990 250 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 AWAT1Q58HT5 328 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 MORN3Q6PF18 240 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 ZNF818PQ6ZRF7 136 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 CD200R1LQ6Q8B3 271 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 GATAD1Q8WUU5 269 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 CSTL1Q9H114 145 aa7.47□□□□□ -1.21
LIMCH1-202ENST00000381753 FAM90A26D6RGX4 464 aa7.46□□□□□ -1.21
LIMCH1-202ENST00000381753 ATP5G1P05496 136 aa7.46□□□□□ -1.21
LIMCH1-202ENST00000381753 ATP5G3P48201 142 aa7.46□□□□□ -1.21
LIMCH1-202ENST00000381753 EWSR1Q01844 656 aaKnown RBP eCLIP7.46□□□□□ -1.21
LIMCH1-202ENST00000381753 OR52E5Q8NH55 327 aa7.46□□□□□ -1.21
LIMCH1-202ENST00000381753 RNF138Q8WVD3 245 aa7.46□□□□□ -1.21
LIMCH1-202ENST00000381753 TMEM70Q9BUB7 260 aa7.46□□□□□ -1.21
LIMCH1-202ENST00000381753 ICOSQ9Y6W8 199 aa7.46□□□□□ -1.21
LIMCH1-202ENST00000381753 M0R2N4 97 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 TNFRSF6BO95407 300 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 CADM3Q8N126 398 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 PHLDA1Q8WV24 401 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 C1orf43Q9BWL3 253 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 RFNGQ9Y644 331 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 DOCK7Q96N67 2140 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 MPC2O95563 127 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 OR1P1Q8NH06 330 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 GAGE12JA6NER3 117 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 GAGE1Q13065 139 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 GAGE4Q13068 117 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 GAGE5Q13069 117 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 GAGE13Q4V321 117 aa7.46□□□□□ -1.22
LIMCH1-202ENST00000381753 ERASQ7Z444 233 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms