RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 C8orf46Q8TAG6 207 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 DUX3Q96PT4 197 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 PNRC2Q9NPJ4 139 aaKnown RBP9.44□□□□□ -0.9
PTPRF-203ENST00000372407 MYOD1P15172 320 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 SRSF4Q08170 494 aaKnown RBP9.44□□□□□ -0.9
PTPRF-203ENST00000372407 C10orf55Q5SWW7 151 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 ALKBH7Q9BT30 221 aaPredicted RBP9.44□□□□□ -0.9
PTPRF-203ENST00000372407 FRMPD3Q5JV73 1810 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 NDUFA3O95167 84 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 SELLP14151 372 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 QRFPP83859 136 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 GFI1BQ5VTD9 330 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 CLDN16Q9Y5I7 305 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 TRAV21A0A0B4J279 112 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 A0A1B0GV72 72 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 C5orf63A6NC05 138 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 TMEM262E9PQX1 116 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 TYMSP04818 313 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 PRB3Q04118 309 aaPredicted RBP9.43□□□□□ -0.9
PTPRF-203ENST00000372407 ITLN2Q8WWU7 325 aaPredicted RBP9.43□□□□□ -0.9
PTPRF-203ENST00000372407 CHCHD1Q96BP2 118 aaKnown RBP9.43□□□□□ -0.9
PTPRF-203ENST00000372407 VKORC1Q9BQB6 163 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 TRBV6-6A0A0A6YYG2 114 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 RNASE4P34096 147 aaKnown RBP9.43□□□□□ -0.9
PTPRF-203ENST00000372407 UNQ6494/PRO21346Q6UXR6 183 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 IFI27L1Q96BM0 104 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 PLSCR4Q9NRQ2 329 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 NHP2Q9NX24 153 aaKnown RBP9.43□□□□□ -0.9
PTPRF-203ENST00000372407 PIEZO1Q92508 2521 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 LYNX1G3V0Z9 82 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 LYNX1P0DP58 116 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 CDKN1AP38936 164 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 OR5AN1Q8NGI8 311 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 TMEM190Q8WZ59 177 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 TNFSF13O75888 250 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 DPM2O94777 84 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 TGFAP01135 160 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 PF4P02776 101 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 CACNG7P62955 275 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 SRSF1Q07955 248 aaKnown RBP eCLIP9.43□□□□□ -0.9
PTPRF-203ENST00000372407 SLC25A48Q6ZT89 311 aaKnown RBP9.43□□□□□ -0.9
PTPRF-203ENST00000372407 NUDT10Q8NFP7 164 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 VCX2Q9H322 139 aa9.43□□□□□ -0.9
PTPRF-203ENST00000372407 TECTAO75443 2155 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 TRAV5A0A0B4J249 113 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 IL18BPO95998 194 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 RNF144BQ7Z419 303 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 SPACA3Q8IXA5 215 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 ST20Q9HBF5 79 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 CYSLTR1Q9Y271 337 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 F2Z2F3 143 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 CD7P09564 240 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 HGFACQ04756 655 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 PTPRQQ9UMZ3 2332 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 NLRC5Q86WI3 1866 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 ORMDL2Q53FV1 153 aa9.42□□□□□ -0.9
PTPRF-203ENST00000372407 SEPSECSQ9HD40 501 aaKnown RBP9.42□□□□□ -0.9
PTPRF-203ENST00000372407 E9PLN8 166 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 CLPSP04118 112 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 IFI27P40305 119 aaPredicted RBP9.41□□□□□ -0.9
PTPRF-203ENST00000372407 TOMM7Q9P0U1 55 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 GBF1Q92538 1859 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 PPIFP30405 207 aaKnown RBP9.41□□□□□ -0.9
PTPRF-203ENST00000372407 FBLN7Q53RD9 439 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 Q6ZS49 121 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 FAM169BQ8N8A8 192 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 LINC01587Q99440 93 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 PMS2P5A8MQ11 134 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 NPIPB5A8MRT5 1133 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 ZNF585BQ52M93 769 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 OR2K2Q8NGT1 345 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 TMEM167AQ8TBQ9 72 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 NPFFR1Q9GZQ6 430 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 TICRRQ7Z2Z1 1910 aa9.41□□□□□ -0.9
PTPRF-203ENST00000372407 DUSP14O95147 198 aaKnown RBP9.4□□□□□ -0.9
PTPRF-203ENST00000372407 PSG1P11464 419 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 TCF15Q12870 199 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 SPATA31B1PQ5VZV4 182 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 ORAOV1Q8WV07 137 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 MSRB2Q9Y3D2 182 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 RFNGQ9Y644 331 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 TSPAN13O95857 204 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 GLMPQ8WWB7 406 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 DERL1Q9BUN8 251 aa9.4□□□□□ -0.9
PTPRF-203ENST00000372407 CNTFRP26992 372 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 SEC11AP67812 179 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 PLA2G2CQ5R387 149 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 JMJD8Q96S16 334 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 MGST2Q99735 147 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 MS4A6AQ9H2W1 248 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 LY96Q9Y6Y9 160 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 NOTCH4Q99466 2003 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 PLXNA3P51805 1871 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 A0A1B0GWJ7 208 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 LINC01549A6NIU2 74 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 THBDP07204 575 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 LYL1P12980 280 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 RASL11AQ6T310 242 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 COLCA1Q6ZS62 124 aa9.4□□□□□ -0.91
PTPRF-203ENST00000372407 C10orf126Q8N4M7 172 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 208.6 ms