RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RPRMQ9NS64 109 aa15.41■□□□□ 0.06
CLN3-205ENST00000359984 TMEM218A2RU14 115 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 SMUG1Q53HV7 270 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 GCSAMLQ5JQS6 135 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 COMMD1Q8N668 190 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 MYOZ3Q8TDC0 251 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 WIPF2Q8TF74 440 aaPredicted RBP15.4■□□□□ 0.06
CLN3-205ENST00000359984 ADMP35318 185 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 RAB2AP61019 212 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 TMEM41BQ5BJD5 291 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 ZNF491Q8N8L2 437 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 OR4F5Q8NH21 305 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 ATP6V0BQ99437 205 aa15.4■□□□□ 0.06
CLN3-205ENST00000359984 GAR1Q9NY12 217 aaKnown RBP15.4■□□□□ 0.06
CLN3-205ENST00000359984 PSG1P11464 419 aa15.39■□□□□ 0.05
CLN3-205ENST00000359984 M6PRP20645 277 aa15.39■□□□□ 0.05
CLN3-205ENST00000359984 YPEL3P61236 119 aaPredicted RBP15.39■□□□□ 0.05
CLN3-205ENST00000359984 ZNF616Q08AN1 781 aa15.39■□□□□ 0.05
CLN3-205ENST00000359984 TCTEX1D4Q5JR98 221 aa15.39■□□□□ 0.05
CLN3-205ENST00000359984 ZNF343Q6P1L6 599 aa15.39■□□□□ 0.05
CLN3-205ENST00000359984 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.38■□□□□ 0.05
CLN3-205ENST00000359984 NUPL2O15504 423 aaKnown RBP15.38■□□□□ 0.05
CLN3-205ENST00000359984 MBP02144 154 aa15.38■□□□□ 0.05
CLN3-205ENST00000359984 RD3LP0DJH9 198 aa15.38■□□□□ 0.05
CLN3-205ENST00000359984 ACOT6Q3I5F7 207 aaPredicted RBP15.38■□□□□ 0.05
CLN3-205ENST00000359984 C10orf91Q5T1B1 145 aa15.38■□□□□ 0.05
CLN3-205ENST00000359984 OR4X2Q8NGF9 303 aa15.38■□□□□ 0.05
CLN3-205ENST00000359984 FAM213BQ8TBF2 198 aa15.38■□□□□ 0.05
CLN3-205ENST00000359984 TGOLN2O43493 480 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 TOMM40O96008 361 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 ADCYAP1P18509 176 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 RPP25LQ8N5L8 163 aaKnown RBP15.37■□□□□ 0.05
CLN3-205ENST00000359984 OR10G4Q8NGN3 311 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 OR10G9Q8NGN4 311 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 OR10G7Q8NGN6 311 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 PPP5D1E7EU14 171 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 SCGB2A1O75556 95 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 TRBV12-3P01733 135 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 CD5P06127 495 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 FABP1P07148 127 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 ZNF414Q96IQ9 312 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 OR5B12Q96R08 314 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 GNB4Q9HAV0 340 aa15.37■□□□□ 0.05
CLN3-205ENST00000359984 CLPSL1A2RUU4 121 aa15.36■□□□□ 0.05
CLN3-205ENST00000359984 APOC3P02656 99 aa15.36■□□□□ 0.05
CLN3-205ENST00000359984 SPSB3Q6PJ21 355 aa15.36■□□□□ 0.05
CLN3-205ENST00000359984 SCRT1Q9BWW7 348 aa15.36■□□□□ 0.05
CLN3-205ENST00000359984 RNF114Q9Y508 228 aa15.36■□□□□ 0.05
CLN3-205ENST00000359984 ZNF726P1Q15940 193 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 DPPA3Q6W0C5 159 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 UBE2E2Q96LR5 201 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 DOK5Q9P104 306 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 C2CD3Q4AC94 2353 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 IGHV3-35A0A0C4DH35 117 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 HAX1O00165 279 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 ARL3P36405 182 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 PROK1P58294 105 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 FAM122CQ6P4D5 195 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 ATRAIDQ6UW56 229 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 PATE2Q6UY27 113 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 OR51G1Q8NGK1 321 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 Q8WTZ3 238 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 TMEM37Q8WXS4 190 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 RCC1LQ96I51 464 aaKnown RBP15.35■□□□□ 0.05
CLN3-205ENST00000359984 NARS2Q96I59 477 aaKnown RBP15.35■□□□□ 0.05
CLN3-205ENST00000359984 TMEM231Q9H6L2 316 aa15.35■□□□□ 0.05
CLN3-205ENST00000359984 JMJD1CQ15652 2540 aa15.34■□□□□ 0.05
CLN3-205ENST00000359984 ORM2P19652 201 aa15.34■□□□□ 0.05
CLN3-205ENST00000359984 PLP1P60201 277 aa15.34■□□□□ 0.05
CLN3-205ENST00000359984 ZNF600Q6ZNG1 722 aa15.34■□□□□ 0.05
CLN3-205ENST00000359984 SSX7Q7RTT5 188 aa15.34■□□□□ 0.05
CLN3-205ENST00000359984 DNAJC4Q9NNZ3 241 aa15.34■□□□□ 0.05
CLN3-205ENST00000359984 CARHSP1Q9Y2V2 147 aaKnown RBP15.34■□□□□ 0.05
CLN3-205ENST00000359984 SETD2Q9BYW2 2564 aaPredicted RBP15.34■□□□□ 0.05
CLN3-205ENST00000359984 WI2-2373I1.2A0A1W2PRP0 233 aa15.33■□□□□ 0.05
CLN3-205ENST00000359984 EIF3GO75821 320 aaKnown RBP eCLIP15.33■□□□□ 0.05
CLN3-205ENST00000359984 LYZP61626 148 aa15.33■□□□□ 0.05
CLN3-205ENST00000359984 OR1B1Q8NGR6 318 aa15.33■□□□□ 0.05
CLN3-205ENST00000359984 TREM1Q9NP99 234 aa15.33■□□□□ 0.05
CLN3-205ENST00000359984 PEF1Q9UBV8 284 aaKnown RBP15.33■□□□□ 0.05
CLN3-205ENST00000359984 PUS1Q9Y606 427 aaKnown RBP eCLIP15.33■□□□□ 0.05
CLN3-205ENST00000359984 SEC14L6B5MCN3 397 aa15.33■□□□□ 0.04
CLN3-205ENST00000359984 COX7A2P2O60397 106 aa15.33■□□□□ 0.04
CLN3-205ENST00000359984 OR2C1O95371 312 aa15.33■□□□□ 0.04
CLN3-205ENST00000359984 HIST2H2BDQ6DRA6 164 aa15.33■□□□□ 0.04
CLN3-205ENST00000359984 OR1L4Q8NGR5 311 aa15.33■□□□□ 0.04
CLN3-205ENST00000359984 ACTR3CQ9C0K3 210 aaPredicted RBP15.33■□□□□ 0.04
CLN3-205ENST00000359984 SLC25A22Q9H936 323 aa15.33■□□□□ 0.04
CLN3-205ENST00000359984 SEPSECSQ9HD40 501 aaKnown RBP15.33■□□□□ 0.04
CLN3-205ENST00000359984 C9JQL5 133 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 BMPR1BO00238 502 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 HYPMO75409 117 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 IL4P05112 153 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 LGALS1P09382 135 aaKnown RBP15.32■□□□□ 0.04
CLN3-205ENST00000359984 CD28P10747 220 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 CDX1P47902 265 aaPredicted RBP15.32■□□□□ 0.04
CLN3-205ENST00000359984 FAM209BQ5JX69 171 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.32■□□□□ 0.04
CLN3-205ENST00000359984 SUN5Q8TC36 379 aa15.32■□□□□ 0.04
CLN3-205ENST00000359984 GATAD1Q8WUU5 269 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms