RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HIST1H1BP16401 226 aaKnown RBP8.25□□□□□ -1.09
LIMA1-201ENST00000341247 FAM209BQ5JX69 171 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 UNQ6494/PRO21346Q6UXR6 183 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 C19orf24Q9BVV8 132 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 HTR1DP28221 377 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 UCNP55089 124 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 BAGE2Q86Y30 109 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 NAT8BQ9UHF3 227 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 CACNA1AO00555 2505 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 TEX22C9J3V5 150 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 IGLV2-8P01709 118 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 GZMBP10144 247 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 ZNF329Q86UD4 541 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 FXYD5Q96DB9 178 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 ZFYVE26Q68DK2 2539 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 LOC105371242A0A075B767 164 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 NCBP2LA6PVI3 153 aaKnown RBP8.24□□□□□ -1.09
LIMA1-201ENST00000341247 NDUFS6O75380 124 aaKnown RBP8.24□□□□□ -1.09
LIMA1-201ENST00000341247 BTF3L4Q96K17 158 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 UBTD1Q9HAC8 227 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 CBLN4Q9NTU7 201 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 PEX7O00628 323 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 HYPMO75409 117 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 IGHV3-23P01764 117 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 CRYGBP07316 175 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 PSG1P11464 419 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 FBXL19-AS1Q494R0 122 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 ETFRF1Q6IPR1 90 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 THAP8Q8NA92 274 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 TMEM18Q96B42 140 aa8.24□□□□□ -1.09
LIMA1-201ENST00000341247 F11RQ9Y624 299 aaKnown RBP8.24□□□□□ -1.09
LIMA1-201ENST00000341247 CENPEQ02224 2701 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 INS-IGF2F8WCM5 200 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 UQCRFS1P47985 274 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 SELENOTP62341 195 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 TPTE2P1Q5T6R2 138 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 BEND2Q8NDZ0 799 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 TNFRSF14Q92956 283 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 PERPQ96FX8 193 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 LPAR2Q9HBW0 351 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 ZANQ9Y493 2812 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 CORTO00230 105 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 SCGB1D1O95968 90 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 BAGE3Q86Y29 109 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 IGF2BP2-AS1Q96M15 143 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 DPM3Q9P2X0 92 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 NBEAP1P0C6P0 100 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 CRISP2P16562 243 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 UBE2G1P62253 170 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 CTAG1AP78358 180 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 RNF2Q99496 336 aa8.23□□□□□ -1.09
LIMA1-201ENST00000341247 USP9XQ93008 2570 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-201ENST00000341247 TRAV8-1A0A0A6YYK1 113 aa8.22□□□□□ -1.09
LIMA1-201ENST00000341247 FSTL3O95633 263 aa8.22□□□□□ -1.09
LIMA1-201ENST00000341247 Q71RC1 249 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-201ENST00000341247 DYNAPQ8N1N2 210 aa8.22□□□□□ -1.09
LIMA1-201ENST00000341247 GBGT1Q8N5D6 347 aa8.22□□□□□ -1.09
LIMA1-201ENST00000341247 IGHV3OR16-8A0A075B7F1 116 aa8.22□□□□□ -1.09
LIMA1-201ENST00000341247 GCGP01275 180 aa8.22□□□□□ -1.09
LIMA1-201ENST00000341247 JOSD1Q15040 202 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-201ENST00000341247 RASL11BQ9BPW5 248 aa8.22□□□□□ -1.09
LIMA1-201ENST00000341247 IGHV3-35A0A0C4DH35 117 aa8.21□□□□□ -1.09
LIMA1-201ENST00000341247 SERF1AO75920 110 aa8.21□□□□□ -1.09
LIMA1-201ENST00000341247 CRYGCP07315 174 aa8.21□□□□□ -1.09
LIMA1-201ENST00000341247 ZFP36P26651 326 aaKnown RBP8.21□□□□□ -1.09
LIMA1-201ENST00000341247 COA6Q5JTJ3 125 aaKnown RBP8.21□□□□□ -1.09
LIMA1-201ENST00000341247 EXOC3-AS1Q8N2X6 119 aa8.21□□□□□ -1.09
LIMA1-201ENST00000341247 CMTM2Q8TAZ6 248 aa8.21□□□□□ -1.09
LIMA1-201ENST00000341247 TP53TG3Q9ULZ0 132 aa8.21□□□□□ -1.09
LIMA1-201ENST00000341247 GPR6P46095 362 aaPredicted RBP8.21□□□□□ -1.09
LIMA1-201ENST00000341247 TMEM116Q8NCL8 245 aa8.21□□□□□ -1.09
LIMA1-201ENST00000341247 LY6LH3BQJ8 138 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 NBR2O15453 112 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 PDLIM4P50479 330 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 YPEL3P61236 119 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-201ENST00000341247 DEFA6Q01524 100 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 BCL6BQ8N143 479 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-201ENST00000341247 MS4A10Q96PG2 267 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 TRGV9Q99603 122 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 CDC42EP3Q9UKI2 254 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 HIGD1AQ9Y241 93 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 LY96Q9Y6Y9 160 aa8.21□□□□□ -1.1
LIMA1-201ENST00000341247 GATCO43716 136 aaKnown RBP8.2□□□□□ -1.1
LIMA1-201ENST00000341247 IGLC1P0CG04 106 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 CAMPP49913 170 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 ZNF600Q6ZNG1 722 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 VMO1Q7Z5L0 202 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 C17orf77Q96MU5 243 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 RBM14Q96PK6 669 aaKnown RBP8.2□□□□□ -1.1
LIMA1-201ENST00000341247 OSTCQ9NRP0 149 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 EPDR1Q9UM22 224 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 ARL2-SNX15V9GYD0 113 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 A6NNC1 897 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 ZNF664Q8N3J9 261 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 NUDT10Q8NFP7 164 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 NUDT11Q96G61 164 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 SSBP4Q9BWG4 385 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-201ENST00000341247 SAMD10Q9BYL1 202 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 Q9H3A6 140 aa8.2□□□□□ -1.1
LIMA1-201ENST00000341247 ZNF705FA8MVS1 300 aaPredicted RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms