RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CACNG8Q8WXS5 425 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 Q9H3A6 140 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 SAA2-SAA4A0A096LPE2 208 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 SAA2P0DJI9 122 aaPredicted RBP12.66□□□□□ -0.38
SHH-201ENST00000297261 FOXC2Q99958 501 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 TRANK1O15050 2925 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 CUL9Q8IWT3 2517 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 LINC00473A8K010 186 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 CD3EP07766 207 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 LGALS7P47929 136 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 SPACA3Q8IXA5 215 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 C1orf162Q8NEQ5 155 aaPredicted RBP12.66□□□□□ -0.38
SHH-201ENST00000297261 ZNF788Q6ZQV5 615 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 OR10W1Q8NGF6 305 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 SPRY4Q9C004 299 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 SOX21Q9Y651 276 aaPredicted RBP12.66□□□□□ -0.38
SHH-201ENST00000297261 SAA1P0DJI8 122 aaPredicted RBP12.66□□□□□ -0.38
SHH-201ENST00000297261 ORMDL3Q8N138 153 aa12.66□□□□□ -0.38
SHH-201ENST00000297261 PRSS2P07478 247 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 TIMM23BQ5SRD1 257 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 OSR1Q8TAX0 266 aaPredicted RBP12.65□□□□□ -0.38
SHH-201ENST00000297261 FAM57AQ8TBR7 257 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 MRPL16Q9NX20 251 aaKnown RBP12.65□□□□□ -0.38
SHH-201ENST00000297261 NCOA6Q14686 2063 aaPredicted RBP12.65□□□□□ -0.38
SHH-201ENST00000297261 IGHV3OR16-13A0A075B7E8 117 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 IGHV3-74A0A0B4J1X5 117 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 AREGP15514 252 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 TCF15Q12870 199 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 ECSCRQ19T08 205 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 RAB1CQ92928 201 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 IGHV2OR16-5A0A0B4J2B6 119 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 MYOD1P15172 320 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 SEC11AP67812 179 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 CD69Q07108 199 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 TMEM78Q5T7P6 136 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 CHODLQ9H9P2 273 aa12.65□□□□□ -0.38
SHH-201ENST00000297261 LSM4Q9Y4Z0 139 aaKnown RBP12.65□□□□□ -0.38
SHH-201ENST00000297261 KBTBD11-OT1A0A1B0GTJ5 212 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 Q0VG73 95 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 WDR82Q6UXN9 313 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 NUP35Q8NFH5 326 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 CST9LQ9H4G1 147 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 GOSR1O95249 250 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 TGFAP01135 160 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 PRSS8Q16651 343 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 ASCL4Q6XD76 172 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 MRPL20Q9BYC9 149 aaKnown RBP12.64□□□□□ -0.39
SHH-201ENST00000297261 GTSF1LQ9H1H1 148 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 GTF3C1Q12789 2109 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 SH2D7A6NKC9 451 aaPredicted RBP12.64□□□□□ -0.39
SHH-201ENST00000297261 UPK2O00526 184 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 ASCL5Q7RTU5 278 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 SIGMAR1Q99720 223 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 IGHV3OR16-8A0A075B7F1 116 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 APOMO95445 188 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 IGHG3P01860 377 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 HTN1P15515 57 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 WT1P19544 449 aaPredicted RBP12.64□□□□□ -0.39
SHH-201ENST00000297261 TDRG1Q3Y452 100 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 OCIAD2Q56VL3 154 aa12.64□□□□□ -0.39
SHH-201ENST00000297261 MRPS16Q9Y3D3 137 aaKnown RBP12.64□□□□□ -0.39
SHH-201ENST00000297261 RSPO1Q2MKA7 263 aaPredicted RBP12.63□□□□□ -0.39
SHH-201ENST00000297261 FOXI3A8MTJ6 420 aaPredicted RBP12.63□□□□□ -0.39
SHH-201ENST00000297261 SYS1-DBNDD2H3BUS1 97 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 YPEL1O60688 119 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 IGKV1-39P01597 117 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 IGKV1D-39P04432 117 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 FXYD7P58549 80 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 C10orf55Q5SWW7 151 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 HAPLN4Q86UW8 402 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 PRR7Q8TB68 274 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 YPEL2Q96QA6 119 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 A0A0G2JLM5 398 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 GAGE1Q13065 139 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 GUSBP1Q15486 140 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 TTC32Q5I0X7 151 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 NEUROG1Q92886 237 aa12.63□□□□□ -0.39
SHH-201ENST00000297261 BEX4Q9NWD9 120 aaPredicted RBP12.63□□□□□ -0.39
SHH-201ENST00000297261 Q6ZS49 121 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 FMC1Q96HJ9 113 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 IQCF6A8MYZ5 107 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 MLANAQ16655 118 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 KHDC1LQ5JSQ8 128 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 F2Z2F3 143 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 DGAT2L7PQ6IED9 249 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 CHCHD1Q96BP2 118 aaKnown RBP12.62□□□□□ -0.39
SHH-201ENST00000297261 FAM53AQ6NSI3 398 aaPredicted RBP12.62□□□□□ -0.39
SHH-201ENST00000297261 TMEM186Q96B77 213 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 RAXQ9Y2V3 346 aa12.62□□□□□ -0.39
SHH-201ENST00000297261 YPEL3P61236 119 aaPredicted RBP12.61□□□□□ -0.39
SHH-201ENST00000297261 FAM169BQ8N8A8 192 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 C18orf32Q8TCD1 76 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 METRNQ9UJH8 293 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 YLPM1P49750 1951 aaKnown RBP12.61□□□□□ -0.39
SHH-201ENST00000297261 NUPR1O60356 82 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 CCL3L1P16619 93 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 GLRXP35754 106 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 RPS20P60866 119 aaKnown RBP12.61□□□□□ -0.39
SHH-201ENST00000297261 TEX45Q8NA69 505 aa12.61□□□□□ -0.39
SHH-201ENST00000297261 FBXL15Q9H469 300 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms