RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 KLF17Q5JT82 389 aaPredicted RBP3.79□□□□□ -1.8
VPS13C-201ENST00000249837 PRR7Q8TB68 274 aa3.79□□□□□ -1.8
VPS13C-201ENST00000249837 AP5S1Q9NUS5 200 aa3.79□□□□□ -1.8
VPS13C-201ENST00000249837 DOPEY1Q5JWR5 2465 aa3.79□□□□□ -1.8
VPS13C-201ENST00000249837 IL4P05112 153 aa3.79□□□□□ -1.8
VPS13C-201ENST00000249837 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.79□□□□□ -1.8
VPS13C-201ENST00000249837 SSC4DQ8WTU2 575 aa3.79□□□□□ -1.8
VPS13C-201ENST00000249837 A1L4Q6 167 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 GOSR1O95249 250 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 APOHP02749 345 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 PPIFP30405 207 aaKnown RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 MEF2CQ06413 473 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 C16orf92Q96LL3 132 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 NAA38Q9BRA0 125 aaKnown RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 PPIAL4CA0A0B4J2A2 164 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 IGHV3-66A0A0C4DH42 116 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 TCRBV4S1A1TA0A5B7 111 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 K7ERU9 68 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 C3orf79P0CE67 100 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 PPIAL4GP0DN37 164 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 C1orf174Q8IYL3 243 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 MCRIP2Q9BUT9 160 aaKnown RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 MAP1LC3AQ9H492 121 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 PRDM13Q9H4Q3 707 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 CCL21O00585 134 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 DKK1O94907 266 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 ZNF138P52744 262 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 FAM90A1Q86YD7 464 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 NUPR1O60356 82 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 ZNF324O75467 553 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 RELQ04864 619 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 RBPMS2Q6ZRY4 209 aaKnown RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 TEX45Q8NA69 505 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 GPR82Q96P67 336 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 A0A1W2PRE2 83 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 TM4SF5O14894 197 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 GPX1P07203 203 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 C1RLQ9NZP8 487 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 hDV102S1A0JD36 115 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 OR2T8A6NH00 312 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 LIPFP07098 398 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 RNASE2P10153 161 aaKnown RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 LOXL3P58215 753 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 RNF138Q8WVD3 245 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 COL25A1Q9BXS0 654 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-201ENST00000249837 MFAP4P55083 255 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 KHDC1LQ5JSQ8 128 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 SPANXN1Q5VSR9 72 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 MYOZ3Q8TDC0 251 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 OTORQ9NRC9 128 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 PSG8Q9UQ74 426 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 FAM90A9PA6NNJ1 464 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 WNT2P09544 360 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 DNLZQ5SXM8 178 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 GNB1LQ9BYB4 327 aa3.78□□□□□ -1.8
VPS13C-201ENST00000249837 C7orf71A4D174 169 aa3.78□□□□□ -1.81
VPS13C-201ENST00000249837 HTN1P15515 57 aa3.78□□□□□ -1.81
VPS13C-201ENST00000249837 EVI2AP22794 236 aa3.78□□□□□ -1.81
VPS13C-201ENST00000249837 RNASEH2CQ8TDP1 164 aaKnown RBP3.78□□□□□ -1.81
VPS13C-201ENST00000249837 SLC25A15Q9Y619 301 aa3.78□□□□□ -1.81
VPS13C-201ENST00000249837 CIARTQ8N365 385 aaPredicted RBP3.77□□□□□ -1.81
VPS13C-201ENST00000249837 TMEM208Q9BTX3 173 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 IGKV1-16P04430 117 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 SRCAPQ6ZRS2 3230 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 ALKBH7Q9BT30 221 aaPredicted RBP3.77□□□□□ -1.81
VPS13C-201ENST00000249837 SCRT1Q9BWW7 348 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 RPUSD1Q9UJJ7 312 aaKnown RBP3.77□□□□□ -1.81
VPS13C-201ENST00000249837 C9JCJ5 164 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 TDGF1P3P51864 188 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 Q1RN00 199 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 C2orf83Q53S99 150 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 DUX4L9Q6RFH8 374 aaPredicted RBP3.77□□□□□ -1.81
VPS13C-201ENST00000249837 TMEM133Q9H2Q1 129 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 AMMECR1LQ6DCA0 310 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 MMP23AO75900 390 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 NCR2O95944 276 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 NPSP0C0P6 89 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 RPL7P18124 248 aaKnown RBP3.77□□□□□ -1.81
VPS13C-201ENST00000249837 NPPCP23582 126 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 CCDC144NLQ6NUI1 221 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 PRELID3AQ96N28 172 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 ARL6IP6Q8N6S5 226 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 OR4A5Q8NH83 315 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 IGHV1-69-2A0A0G2JMI3 117 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 FABP2P12104 132 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 VDAC2P45880 294 aaPredicted RBP3.77□□□□□ -1.81
VPS13C-201ENST00000249837 GAFA1Q96PS6 74 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 AREGP15514 252 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 Q8NFD4 153 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 LINC00312Q9Y6C7 94 aa3.77□□□□□ -1.81
VPS13C-201ENST00000249837 LOC105371242A0A075B767 164 aa3.76□□□□□ -1.81
VPS13C-201ENST00000249837 J3QR89 54 aa3.76□□□□□ -1.81
VPS13C-201ENST00000249837 CX3CL1P78423 397 aa3.76□□□□□ -1.81
VPS13C-201ENST00000249837 TDRG1Q3Y452 100 aa3.76□□□□□ -1.81
VPS13C-201ENST00000249837 NUP35Q8NFH5 326 aa3.76□□□□□ -1.81
VPS13C-201ENST00000249837 FNDC4Q9H6D8 234 aaPredicted RBP3.76□□□□□ -1.81
VPS13C-201ENST00000249837 SMKR1H3BMG3 65 aa3.76□□□□□ -1.81
VPS13C-201ENST00000249837 FBLN7Q53RD9 439 aa3.76□□□□□ -1.81
VPS13C-201ENST00000249837 TRAV8-1A0A0A6YYK1 113 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms