RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 YPEL3P61236 119 aaPredicted RBP14.05□□□□□ -0.16
CCDC28A-203ENST00000617445 SRPXP78539 464 aa14.05□□□□□ -0.16
CCDC28A-203ENST00000617445 NMSQ5H8A3 153 aa14.05□□□□□ -0.16
CCDC28A-203ENST00000617445 LILRB2Q8N423 598 aa14.05□□□□□ -0.16
CCDC28A-203ENST00000617445 GRAMD2BQ96HH9 432 aa14.05□□□□□ -0.16
CCDC28A-203ENST00000617445 MCUBQ9NWR8 336 aa14.05□□□□□ -0.16
CCDC28A-203ENST00000617445 SHPKQ9UHJ6 478 aa14.05□□□□□ -0.16
CCDC28A-203ENST00000617445 RYR2Q92736 4967 aa14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 NUPR2A6NF83 97 aa14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 EIF2B2P49770 351 aaKnown RBP14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 CCR6P51684 374 aa14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 ATP5IP56385 69 aaPredicted RBP14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 AP3S2P59780 193 aa14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 PRSS54Q6PEW0 395 aa14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 Q8WTZ3 238 aa14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 U3KQ87 197 aa14.04□□□□□ -0.16
CCDC28A-203ENST00000617445 IGHV3-66A0A0C4DH42 116 aa14.03□□□□□ -0.16
CCDC28A-203ENST00000617445 CXorf65A6NEN9 183 aa14.03□□□□□ -0.16
CCDC28A-203ENST00000617445 IGLC1P0CG04 106 aa14.03□□□□□ -0.16
CCDC28A-203ENST00000617445 NPY1RP25929 384 aa14.03□□□□□ -0.16
CCDC28A-203ENST00000617445 TIGITQ495A1 244 aa14.03□□□□□ -0.16
CCDC28A-203ENST00000617445 LGI3Q8N145 548 aa14.03□□□□□ -0.16
CCDC28A-203ENST00000617445 DEDD2Q8WXF8 326 aa14.03□□□□□ -0.16
CCDC28A-203ENST00000617445 DNAH1Q9P2D7 4330 aa14.03□□□□□ -0.16
CCDC28A-203ENST00000617445 AKR1C4P17516 323 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 OR10J1P30954 320 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 S100A5P33763 92 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 P2RY1P47900 373 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 RND2P52198 227 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 DEFB131AP59861 70 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 SMCO1Q147U7 214 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 ZNF124Q15973 351 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 HSPB7Q9UBY9 170 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 RABAC1Q9UI14 185 aa14.02□□□□□ -0.17
CCDC28A-203ENST00000617445 HELTA6NFD8 242 aa14.01□□□□□ -0.17
CCDC28A-203ENST00000617445 AP2S1P53680 142 aaPredicted RBP14.01□□□□□ -0.17
CCDC28A-203ENST00000617445 SUPT4H1P63272 117 aaKnown RBP14.01□□□□□ -0.17
CCDC28A-203ENST00000617445 RARRES2Q99969 163 aa14.01□□□□□ -0.17
CCDC28A-203ENST00000617445 KLK5Q9Y337 293 aaPredicted RBP14.01□□□□□ -0.17
CCDC28A-203ENST00000617445 U3KQE9 123 aa14.01□□□□□ -0.17
CCDC28A-203ENST00000617445 DUXBA0A1W2PPF3 345 aa14□□□□□ -0.17
CCDC28A-203ENST00000617445 K7EQG2 157 aa14□□□□□ -0.17
CCDC28A-203ENST00000617445 IFNA10P01566 189 aa14□□□□□ -0.17
CCDC28A-203ENST00000617445 PMS2P11Q13670 270 aa14□□□□□ -0.17
CCDC28A-203ENST00000617445 TMEM41BQ5BJD5 291 aa14□□□□□ -0.17
CCDC28A-203ENST00000617445 CEMP1Q6PRD7 247 aaPredicted RBP14□□□□□ -0.17
CCDC28A-203ENST00000617445 STHQ8IWL8 128 aa14□□□□□ -0.17
CCDC28A-203ENST00000617445 STXBP6Q8NFX7 210 aa14□□□□□ -0.17
CCDC28A-203ENST00000617445 TMEM170AQ8WVE7 144 aa14□□□□□ -0.17
CCDC28A-203ENST00000617445 HNRNPCP07910 306 aaKnown RBP eCLIP13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 EWSR1Q01844 656 aaKnown RBP eCLIP13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 KLF9Q13886 244 aaPredicted RBP13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 PYDC2Q56P42 97 aa13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 TMEM128Q5BJH2 165 aa13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 LYZL2Q7Z4W2 148 aa13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 TOMM5Q8N4H5 51 aa13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 DTD1Q8TEA8 209 aa13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 SLC25A21Q9BQT8 299 aaPredicted RBP13.99□□□□□ -0.17
CCDC28A-203ENST00000617445 CA1P00915 261 aaPredicted RBP13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 RD3LP0DJH9 198 aa13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 RBMS2Q15434 407 aaKnown RBP13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 LEMD1Q68G75 181 aa13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 OR11H2Q8NH07 326 aa13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 NPIPB3Q92617 1050 aa13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 TRIM63Q969Q1 353 aa13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 C11orf68Q9H3H3 251 aaKnown RBP13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 PRR13Q9NZ81 148 aa13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 AGRNO00468 2067 aa13.98□□□□□ -0.17
CCDC28A-203ENST00000617445 NXPH3O95157 252 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 TOMM40O96008 361 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 SLC25A6P12236 298 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 GPX4P36969 197 aaPredicted RBP13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 MORN3Q6PF18 240 aaPredicted RBP13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 C16orf54Q6UWD8 224 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 FAM24BQ8N5W8 94 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 OR1S1Q8NH92 325 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 DCANP1Q8TF63 244 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 MFFQ9GZY8 342 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 RBKSQ9H477 322 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 SEPSECSQ9HD40 501 aaKnown RBP13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 PFDN2Q9UHV9 154 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 V9GYH0 126 aa13.97□□□□□ -0.17
CCDC28A-203ENST00000617445 IFNA4P05014 189 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 IL4P05112 153 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 SPP1P10451 314 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 NUP62P37198 522 aaPredicted RBP13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 CCDC190Q86UF4 302 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 LRTM2Q8N967 370 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 GLMPQ8WWB7 406 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 LINC00476Q8WZB0 136 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 ACY3Q96HD9 319 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 NDUFA13Q9P0J0 144 aa13.96□□□□□ -0.17
CCDC28A-203ENST00000617445 DHRS2Q13268 280 aa13.95□□□□□ -0.18
CCDC28A-203ENST00000617445 TMED4Q7Z7H5 227 aa13.95□□□□□ -0.18
CCDC28A-203ENST00000617445 FAM90A26D6RGX4 464 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 BUB3O43684 328 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 PITX3O75364 302 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 MED6O75586 246 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 FABP1P07148 127 aa13.94□□□□□ -0.18
CCDC28A-203ENST00000617445 ZNF688P0C7X2 276 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms