RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZNF207O43670 478 aaKnown RBP11.33□□□□□ -0.6
UPF1-202ENST00000594243 OR10J1P30954 320 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 BMI1P35226 326 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 POLR2GP62487 172 aaKnown RBP eCLIP11.33□□□□□ -0.6
UPF1-202ENST00000594243 SPANXN5Q5MJ07 72 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 SLC16A13Q7RTY0 426 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 Q8N1Y9 231 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 ZBTB8BQ8NAP8 495 aaPredicted RBP11.33□□□□□ -0.6
UPF1-202ENST00000594243 Q8WTZ3 238 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 NPIPB3Q92617 1050 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 WDR89Q96FK6 387 aaPredicted RBP11.33□□□□□ -0.6
UPF1-202ENST00000594243 ACY3Q96HD9 319 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 ZNF414Q96IQ9 312 aa11.33□□□□□ -0.6
UPF1-202ENST00000594243 STRAPQ9Y3F4 350 aaKnown RBP11.33□□□□□ -0.6
UPF1-202ENST00000594243 C5orf51A6NDU8 294 aa11.32□□□□□ -0.6
UPF1-202ENST00000594243 PRAF2O60831 178 aa11.32□□□□□ -0.6
UPF1-202ENST00000594243 IGLC1P0CG04 106 aa11.32□□□□□ -0.6
UPF1-202ENST00000594243 YPEL3P61236 119 aaPredicted RBP11.32□□□□□ -0.6
UPF1-202ENST00000594243 TIGITQ495A1 244 aa11.32□□□□□ -0.6
UPF1-202ENST00000594243 TMEM61Q8N0U2 210 aa11.32□□□□□ -0.6
UPF1-202ENST00000594243 SLC35E1Q96K37 410 aa11.32□□□□□ -0.6
UPF1-202ENST00000594243 SMIM8Q96KF7 97 aa11.32□□□□□ -0.6
UPF1-202ENST00000594243 PSENENQ9NZ42 101 aa11.32□□□□□ -0.6
UPF1-202ENST00000594243 FAM25EA8MYX2 175 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 INMT-MINDY4F8WBC2 141 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 CHEK1O14757 476 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 SSSCA1O60232 199 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 SCAF4O95104 1147 aaKnown RBP11.31□□□□□ -0.6
UPF1-202ENST00000594243 SCGB1D2O95969 90 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 IGKV1-17P01599 117 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 CD5P06127 495 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 NPPCP23582 126 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 CD81P60033 236 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 GAMTQ14353 236 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 GSG1LQ6UXU4 331 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 RAB40CQ96S21 281 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 NEURL2Q9BR09 285 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 MARVELD1Q9BSK0 173 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 RHPN1-AS1Q9BWJ2 59 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 ZFAND3Q9H8U3 227 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 SELENOKQ9Y6D0 94 aa11.31□□□□□ -0.6
UPF1-202ENST00000594243 SNRPGP15A8MWD9 76 aa11.3□□□□□ -0.6
UPF1-202ENST00000594243 A8MZ25 164 aa11.3□□□□□ -0.6
UPF1-202ENST00000594243 CCSO14618 274 aa11.3□□□□□ -0.6
UPF1-202ENST00000594243 TSPAN4O14817 238 aa11.3□□□□□ -0.6
UPF1-202ENST00000594243 TAS2R30P59541 319 aa11.3□□□□□ -0.6
UPF1-202ENST00000594243 C2orf50Q96LR7 162 aa11.3□□□□□ -0.6
UPF1-202ENST00000594243 METTL26Q96S19 204 aa11.3□□□□□ -0.6
UPF1-202ENST00000594243 SPAG8Q99932 426 aaPredicted RBP11.3□□□□□ -0.6
UPF1-202ENST00000594243 TMEM231Q9H6L2 316 aa11.3□□□□□ -0.6
UPF1-202ENST00000594243 A0A1W2PS18 150 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 ZFP92A6NM28 416 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 H3BP45 60 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 TOMM40O96008 361 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 MBPP02686 304 aaPredicted RBP11.29□□□□□ -0.6
UPF1-202ENST00000594243 FABP1P07148 127 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 NHLRC4P0CG21 123 aaPredicted RBP11.29□□□□□ -0.6
UPF1-202ENST00000594243 RD3LP0DJH9 198 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 IGHV4-30-4P0DP06 118 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 NARS2Q96I59 477 aaKnown RBP11.29□□□□□ -0.6
UPF1-202ENST00000594243 RNF2Q99496 336 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 TUBA4BQ9H853 241 aa11.29□□□□□ -0.6
UPF1-202ENST00000594243 IGHV3-49A0A0A0MS15 119 aa11.28□□□□□ -0.6
UPF1-202ENST00000594243 TSC22D2O75157 780 aa11.28□□□□□ -0.6
UPF1-202ENST00000594243 CD7P09564 240 aa11.28□□□□□ -0.6
UPF1-202ENST00000594243 FRMD6-AS1P0C7T7 363 aa11.28□□□□□ -0.6
UPF1-202ENST00000594243 CRYBB3P26998 211 aa11.28□□□□□ -0.6
UPF1-202ENST00000594243 PAX9P55771 341 aa11.28□□□□□ -0.6
UPF1-202ENST00000594243 VSIRQ9H7M9 311 aa11.28□□□□□ -0.6
UPF1-202ENST00000594243 C19orf73Q9NVV2 129 aa11.28□□□□□ -0.6
UPF1-202ENST00000594243 PRSS46E5RG02 174 aa11.27□□□□□ -0.61
UPF1-202ENST00000594243 L7N2F9 121 aa11.27□□□□□ -0.61
UPF1-202ENST00000594243 IL4P05112 153 aa11.27□□□□□ -0.61
UPF1-202ENST00000594243 PSG1P11464 419 aa11.27□□□□□ -0.61
UPF1-202ENST00000594243 PVALBP20472 110 aaPredicted RBP11.27□□□□□ -0.61
UPF1-202ENST00000594243 VAMP2P63027 116 aa11.27□□□□□ -0.61
UPF1-202ENST00000594243 PAFAH1B2P68402 229 aa11.27□□□□□ -0.61
UPF1-202ENST00000594243 OR51G1Q8NGK1 321 aa11.27□□□□□ -0.61
UPF1-202ENST00000594243 GRAMD2BQ96HH9 432 aa11.27□□□□□ -0.61
UPF1-202ENST00000594243 RCL1Q9Y2P8 373 aaKnown RBP11.27□□□□□ -0.61
UPF1-202ENST00000594243 IGHV3OR16-13A0A075B7E8 117 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 IGHV3-74A0A0B4J1X5 117 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 C7orf66A4D0T2 115 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 OR4C46A6NHA9 309 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 OR11H12B2RN74 326 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 APOHP02749 345 aaPredicted RBP11.26□□□□□ -0.61
UPF1-202ENST00000594243 HNRNPCP07910 306 aaKnown RBP eCLIP11.26□□□□□ -0.61
UPF1-202ENST00000594243 FAM90A2PQ658T7 463 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 OR8G2PQ6IF36 304 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 TMEM14EPQ6UXP3 125 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 OR10P1Q8NGE3 313 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 ST8SIA2Q92186 375 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 TRGV9Q99603 122 aa11.26□□□□□ -0.61
UPF1-202ENST00000594243 LSM5Q9Y4Y9 91 aaKnown RBP11.26□□□□□ -0.61
UPF1-202ENST00000594243 IGKV1D-37A0A075B6S9 117 aa11.25□□□□□ -0.61
UPF1-202ENST00000594243 PMS2P5A8MQ11 134 aa11.25□□□□□ -0.61
UPF1-202ENST00000594243 K7EPK0 472 aa11.25□□□□□ -0.61
UPF1-202ENST00000594243 CFDP00746 253 aaPredicted RBP11.25□□□□□ -0.61
UPF1-202ENST00000594243 CMC4P56277 68 aaPredicted RBP11.25□□□□□ -0.61
UPF1-202ENST00000594243 TCF24Q7RTU0 167 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms