RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 RBMS3Q6XE24 437 aaKnown RBP16.25■□□□□ 0.19
PNKP-203ENST00000593946 NPFFR1Q9GZQ6 430 aa16.25■□□□□ 0.19
PNKP-203ENST00000593946 ZNF355PQ9NSJ1 428 aa16.25■□□□□ 0.19
PNKP-203ENST00000593946 ANK3Q12955 4377 aaKnown RBP16.24■□□□□ 0.19
PNKP-203ENST00000593946 TRAV1-1A0A0B4J248 108 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 SEC14L6B5MCN3 397 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 FOSL1P15407 271 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 DEFA5Q01523 94 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 IL34Q6ZMJ4 242 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 NECAP1Q8NC96 275 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 VN1R17PQ8TDU5 208 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 MBD3L1Q8WWY6 194 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 MARC2Q969Z3 335 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 DUX5Q96PT3 197 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 PRSS22Q9GZN4 317 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 GSX1Q9H4S2 264 aaPredicted RBP16.24■□□□□ 0.19
PNKP-203ENST00000593946 C21orf62Q9NYP8 219 aa16.24■□□□□ 0.19
PNKP-203ENST00000593946 NUDT19A8MXV4 375 aa16.23■□□□□ 0.19
PNKP-203ENST00000593946 F8W735 103 aaPredicted RBP16.23■□□□□ 0.19
PNKP-203ENST00000593946 BRI3O95415 125 aa16.23■□□□□ 0.19
PNKP-203ENST00000593946 MFAP4P55083 255 aa16.23■□□□□ 0.19
PNKP-203ENST00000593946 C15orf32Q32M92 178 aa16.23■□□□□ 0.19
PNKP-203ENST00000593946 SFT2D1Q8WV19 159 aa16.23■□□□□ 0.19
PNKP-203ENST00000593946 SLC25A22Q9H936 323 aa16.23■□□□□ 0.19
PNKP-203ENST00000593946 S4R3C0 116 aa16.23■□□□□ 0.19
PNKP-203ENST00000593946 CTXND1A0A1B0GTU2 59 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 DNAJC9-AS1A6NH13 148 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 H3BUA1 57 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 IGKV1-17P01599 117 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 CD99P14209 185 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 FCGR2BP31994 310 aaPredicted RBP16.22■□□□□ 0.19
PNKP-203ENST00000593946 NPBWR1P48145 328 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 CFHR3Q02985 330 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 TMEM95Q3KNT9 176 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 FAM122CQ6P4D5 195 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 EIF4E3Q8N5X7 224 aaKnown RBP16.22■□□□□ 0.19
PNKP-203ENST00000593946 CITED4Q96RK1 184 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 ACTR3CQ9C0K3 210 aaPredicted RBP16.22■□□□□ 0.19
PNKP-203ENST00000593946 ZNF702PQ9H963 129 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 CDC42EP3Q9UKI2 254 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 SETXQ7Z333 2677 aaKnown RBP16.22■□□□□ 0.19
PNKP-203ENST00000593946 NSD1Q96L73 2696 aaPredicted RBP16.22■□□□□ 0.19
PNKP-203ENST00000593946 HBE1P02100 147 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 CDC34P49427 236 aaPredicted RBP16.22■□□□□ 0.19
PNKP-203ENST00000593946 RAB24Q969Q5 203 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 MS4A10Q96PG2 267 aa16.22■□□□□ 0.19
PNKP-203ENST00000593946 RAB19A4D1S5 217 aa16.21■□□□□ 0.19
PNKP-203ENST00000593946 PSMB11A5LHX3 300 aa16.21■□□□□ 0.19
PNKP-203ENST00000593946 MAP1LC3B2A6NCE7 125 aa16.21■□□□□ 0.19
PNKP-203ENST00000593946 SRD5A1P18405 259 aa16.21■□□□□ 0.19
PNKP-203ENST00000593946 LCN15Q6UWW0 184 aa16.21■□□□□ 0.19
PNKP-203ENST00000593946 COMMD1Q8N668 190 aa16.21■□□□□ 0.19
PNKP-203ENST00000593946 TXN2Q99757 166 aa16.21■□□□□ 0.19
PNKP-203ENST00000593946 MAP1LC3BQ9GZQ8 125 aa16.21■□□□□ 0.19
PNKP-203ENST00000593946 A0A1B0GV50 99 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 FAM223BA6NKX1 122 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 IGLV1-40P01703 118 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 TIGITQ495A1 244 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 FAM223AQ8IWN6 122 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 Q8N2B8 174 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 ZNF502Q8TBZ5 544 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 ESM1Q9NQ30 184 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 NF1P21359 2839 aa16.2■□□□□ 0.18
PNKP-203ENST00000593946 TRAV30A0A087WSZ9 112 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 GNG7O60262 68 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 EIF3GO75821 320 aaKnown RBP eCLIP16.19■□□□□ 0.18
PNKP-203ENST00000593946 CCL20P78556 96 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 C19orf24Q9BVV8 132 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 A0A1W2PPV4 95 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 CLDN34H7C241 214 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 IGHV3-23P01764 117 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 RHOBP62745 196 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 Q56UQ5 140 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 TMEM37Q8WXS4 190 aa16.19■□□□□ 0.18
PNKP-203ENST00000593946 SEPSECSQ9HD40 501 aaKnown RBP16.19■□□□□ 0.18
PNKP-203ENST00000593946 HMGB3O15347 200 aaKnown RBP16.18■□□□□ 0.18
PNKP-203ENST00000593946 TRGV3P03979 118 aa16.18■□□□□ 0.18
PNKP-203ENST00000593946 OR5G3P0C626 314 aa16.18■□□□□ 0.18
PNKP-203ENST00000593946 PSG1P11464 419 aa16.18■□□□□ 0.18
PNKP-203ENST00000593946 FGF8P55075 233 aaPredicted RBP16.18■□□□□ 0.18
PNKP-203ENST00000593946 GATAD1Q8WUU5 269 aa16.18■□□□□ 0.18
PNKP-203ENST00000593946 FABP1P07148 127 aa16.17■□□□□ 0.18
PNKP-203ENST00000593946 PLP1P60201 277 aa16.17■□□□□ 0.18
PNKP-203ENST00000593946 YPEL3P61236 119 aaPredicted RBP16.17■□□□□ 0.18
PNKP-203ENST00000593946 EEF1AKMT3Q96AZ1 226 aa16.17■□□□□ 0.18
PNKP-203ENST00000593946 CCDC140Q96MF4 163 aa16.17■□□□□ 0.18
PNKP-203ENST00000593946 PFDN5Q99471 154 aa16.17■□□□□ 0.18
PNKP-203ENST00000593946 TRBV7-1A0A0A6YYK4 115 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 OR2T8A6NH00 312 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 IGHG4P01861 327 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 TPPP2P59282 170 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 ATP5G2Q06055 141 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 FAM78BQ5VT40 261 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 OR1L4Q8NGR5 311 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 SCRT1Q9BWW7 348 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 DNAJC4Q9NNZ3 241 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 TOMM40O96008 361 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 CTSGP08311 255 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 RD3LP0DJH9 198 aa16.16■□□□□ 0.18
PNKP-203ENST00000593946 SPATA31B1PQ5VZV4 182 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms