RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 IGHV4-28A0A0C4DH34 117 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 SPP1P10451 314 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 PI3P19957 117 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 AKR1C2P52895 323 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 PPP5CP53041 499 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 AP3S2P59780 193 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 KLF9Q13886 244 aaPredicted RBP15.29■□□□□ 0.04
VPS53-216ENST00000574029 MORN3Q6PF18 240 aaPredicted RBP15.29■□□□□ 0.04
VPS53-216ENST00000574029 OR51S1Q8NGJ8 323 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 OR4X1Q8NH49 305 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 METTL26Q96S19 204 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 SRRQ9GZT4 340 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 SCP2D1Q9UJQ7 156 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 GPR132Q9UNW8 380 aa15.29■□□□□ 0.04
VPS53-216ENST00000574029 ZNF705EA8MWA4 302 aaPredicted RBP15.28■□□□□ 0.04
VPS53-216ENST00000574029 ATG12O94817 140 aa15.28■□□□□ 0.04
VPS53-216ENST00000574029 MIFP14174 115 aa15.28■□□□□ 0.04
VPS53-216ENST00000574029 P2RY1P47900 373 aa15.28■□□□□ 0.04
VPS53-216ENST00000574029 CCDC71LQ8N9Z2 235 aa15.28■□□□□ 0.04
VPS53-216ENST00000574029 STXBP6Q8NFX7 210 aa15.28■□□□□ 0.04
VPS53-216ENST00000574029 DCANP1Q8TF63 244 aa15.28■□□□□ 0.04
VPS53-216ENST00000574029 RTBDNQ9BSG5 229 aaPredicted RBP15.28■□□□□ 0.04
VPS53-216ENST00000574029 PDCD10Q9BUL8 212 aa15.28■□□□□ 0.04
VPS53-216ENST00000574029 PCLOQ9Y6V0 5065 aa15.28■□□□□ 0.04
VPS53-216ENST00000574029 C3orf85A0A1B0GTC6 90 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 B3GALNT1O75752 331 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 C4BPBP20851 252 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 OPRK1P41145 380 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 HOXA1P49639 335 aaPredicted RBP15.27■□□□□ 0.04
VPS53-216ENST00000574029 MLANAQ16655 118 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 BSXQ3C1V8 233 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 TOMM5Q8N4H5 51 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 COPZ2Q9P299 210 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 X6R8D5 127 aa15.27■□□□□ 0.04
VPS53-216ENST00000574029 AGRNO00468 2067 aa15.27■□□□□ 0.03
VPS53-216ENST00000574029 ZNF688P0C7X2 276 aa15.26■□□□□ 0.03
VPS53-216ENST00000574029 HLA-DMBP28068 263 aa15.26■□□□□ 0.03
VPS53-216ENST00000574029 FAUP35544 74 aaKnown RBP15.26■□□□□ 0.03
VPS53-216ENST00000574029 TMEM230Q96A57 120 aa15.26■□□□□ 0.03
VPS53-216ENST00000574029 SCGB3A2Q96PL1 93 aa15.26■□□□□ 0.03
VPS53-216ENST00000574029 C14orf166Q9Y224 244 aaKnown RBP15.26■□□□□ 0.03
VPS53-216ENST00000574029 A0A0G2JRQ6 117 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 KNCNA6PVL3 124 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 SCGB2A1O75556 95 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 IGKV1-17P01599 117 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 LINC00299Q6ZSB3 139 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 CSNK1G2-AS1Q8NCQ2 148 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 ENY2Q9NPA8 101 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 MCUBQ9NWR8 336 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 U3KQE9 123 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 HECTD4Q9Y4D8 3996 aa15.25■□□□□ 0.03
VPS53-216ENST00000574029 TRAV30A0A087WSZ9 112 aa15.24■□□□□ 0.03
VPS53-216ENST00000574029 ELOA3CA0A087WX78 387 aaPredicted RBP15.24■□□□□ 0.03
VPS53-216ENST00000574029 TRAV10A0A0B4J240 114 aa15.24■□□□□ 0.03
VPS53-216ENST00000574029 UCP1P25874 307 aa15.24■□□□□ 0.03
VPS53-216ENST00000574029 TRIM16LQ309B1 348 aa15.24■□□□□ 0.03
VPS53-216ENST00000574029 SP6Q3SY56 376 aa15.24■□□□□ 0.03
VPS53-216ENST00000574029 TIGITQ495A1 244 aa15.24■□□□□ 0.03
VPS53-216ENST00000574029 Q6ZTC4 211 aa15.24■□□□□ 0.03
VPS53-216ENST00000574029 NARS2Q96I59 477 aaKnown RBP15.24■□□□□ 0.03
VPS53-216ENST00000574029 SDHCQ99643 169 aaPredicted RBP15.24■□□□□ 0.03
VPS53-216ENST00000574029 DNAH6Q9C0G6 4158 aa15.24■□□□□ 0.03
VPS53-216ENST00000574029 BAK1Q16611 211 aa15.23■□□□□ 0.03
VPS53-216ENST00000574029 AARDQ4LEZ3 155 aa15.23■□□□□ 0.03
VPS53-216ENST00000574029 ACTL10Q5JWF8 245 aa15.23■□□□□ 0.03
VPS53-216ENST00000574029 Q6ZRM9 215 aa15.23■□□□□ 0.03
VPS53-216ENST00000574029 RRNAD1Q96FB5 475 aaKnown RBP15.23■□□□□ 0.03
VPS53-216ENST00000574029 TBC1D24Q9ULP9 559 aa15.23■□□□□ 0.03
VPS53-216ENST00000574029 IGHV4-4A0A075B6R2 117 aa15.22■□□□□ 0.03
VPS53-216ENST00000574029 CRYM-AS1A6NIL9 109 aa15.22■□□□□ 0.03
VPS53-216ENST00000574029 TMEM222Q9H0R3 208 aa15.22■□□□□ 0.03
VPS53-216ENST00000574029 NAA60Q9H7X0 242 aa15.22■□□□□ 0.03
VPS53-216ENST00000574029 CLEC5AQ9NY25 188 aa15.22■□□□□ 0.03
VPS53-216ENST00000574029 TEX13DA0A0J9YY54 714 aaPredicted RBP15.21■□□□□ 0.03
VPS53-216ENST00000574029 HELTA6NFD8 242 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 CDS2O95674 445 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 IGLC1P0CG04 106 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 EIF2B2P49770 351 aaKnown RBP15.21■□□□□ 0.03
VPS53-216ENST00000574029 SPCS3P61009 180 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 DHRS2Q13268 280 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 CNPY1Q3B7I2 92 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 C16orf54Q6UWD8 224 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 OR52E5Q8NH55 327 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 GLYATL2Q8WU03 294 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 GLMPQ8WWB7 406 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 RAB40CQ96S21 281 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 RNF126Q9BV68 326 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 BATF3Q9NR55 127 aa15.21■□□□□ 0.03
VPS53-216ENST00000574029 RPS10-NUDT3A0A1W2PQS6 291 aa15.2■□□□□ 0.02
VPS53-216ENST00000574029 HTR2BP41595 481 aa15.2■□□□□ 0.02
VPS53-216ENST00000574029 AP2S1P53680 142 aaPredicted RBP15.2■□□□□ 0.02
VPS53-216ENST00000574029 DHODHQ02127 395 aa15.2■□□□□ 0.02
VPS53-216ENST00000574029 FAM219AQ8IW50 185 aa15.2■□□□□ 0.02
VPS53-216ENST00000574029 CENPSQ8N2Z9 138 aa15.2■□□□□ 0.02
VPS53-216ENST00000574029 OR1S2Q8NGQ3 325 aa15.2■□□□□ 0.02
VPS53-216ENST00000574029 RNASE11Q8TAA1 199 aaKnown RBP15.2■□□□□ 0.02
VPS53-216ENST00000574029 SLC25A21Q9BQT8 299 aaPredicted RBP15.2■□□□□ 0.02
VPS53-216ENST00000574029 HNRNPCP07910 306 aaKnown RBP eCLIP15.19■□□□□ 0.021e-6■■□□□ 11.4
VPS53-216ENST00000574029 OR5AC1P0C628 307 aa15.19■□□□□ 0.02
VPS53-216ENST00000574029 YPEL3P61236 119 aaPredicted RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms