RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MFAP2P55001 183 aa18.29■□□□□ 0.52
VPS53-211ENST00000571805 COX19Q49B96 90 aa18.29■□□□□ 0.52
VPS53-211ENST00000571805 FAM168AQ92567 244 aa18.29■□□□□ 0.52
VPS53-211ENST00000571805 NGBQ9NPG2 151 aa18.29■□□□□ 0.52
VPS53-211ENST00000571805 KIR2DL5BA0A0G2JN68 375 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 KIR2DL5BA0A0G2JPC4 375 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 KIR2DL5AQ8N109 375 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 TEX45Q8NA69 505 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 TBX15Q96SF7 602 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 SERTAD4Q9NUC0 356 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 MYCNOSP40205 109 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 LINC00305Q7Z4B0 112 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 HSPB9Q9BQS6 159 aa18.28■□□□□ 0.52
VPS53-211ENST00000571805 PEX7O00628 323 aa18.27■□□□□ 0.52
VPS53-211ENST00000571805 AMY1AP04745 511 aa18.27■□□□□ 0.52
VPS53-211ENST00000571805 CRYGBP07316 175 aa18.27■□□□□ 0.52
VPS53-211ENST00000571805 HCP5Q6MZN7 132 aa18.27■□□□□ 0.52
VPS53-211ENST00000571805 ZNF705FA8MVS1 300 aaPredicted RBP18.27■□□□□ 0.52
VPS53-211ENST00000571805 CA1P00915 261 aaPredicted RBP18.27■□□□□ 0.52
VPS53-211ENST00000571805 ZNF705DP0CH99 300 aaPredicted RBP18.27■□□□□ 0.52
VPS53-211ENST00000571805 ZNF705BP0CI00 300 aaPredicted RBP18.27■□□□□ 0.52
VPS53-211ENST00000571805 ASPHD1Q5U4P2 390 aa18.27■□□□□ 0.52
VPS53-211ENST00000571805 MBD6Q96DN6 1003 aa18.27■□□□□ 0.52
VPS53-211ENST00000571805 TNFRSF19Q9NS68 423 aa18.27■□□□□ 0.52
VPS53-211ENST00000571805 TRAV34A0A0B4J273 112 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 IZUMO1RA6ND01 250 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 APOBEC3AP31941 199 aaPredicted RBP18.26■□□□□ 0.51
VPS53-211ENST00000571805 DLX1P56177 255 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 KIAA1644Q3SXP7 199 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 TPTE2P1Q5T6R2 138 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 MRPL54Q6P161 138 aaKnown RBP18.26■□□□□ 0.51
VPS53-211ENST00000571805 FAM231DQ6ZW35 169 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 APC2O95996 2303 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 PLAUP00749 431 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 IGLV1-47P01700 117 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 CNTFRP26992 372 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 ETFRF1Q6IPR1 90 aa18.26■□□□□ 0.51
VPS53-211ENST00000571805 MOSP00540 346 aa18.25■□□□□ 0.51
VPS53-211ENST00000571805 NBL1P41271 181 aa18.25■□□□□ 0.51
VPS53-211ENST00000571805 OR10J3Q5JRS4 329 aa18.25■□□□□ 0.51
VPS53-211ENST00000571805 C19orf35Q6ZS72 473 aa18.25■□□□□ 0.51
VPS53-211ENST00000571805 TNFRSF14Q92956 283 aa18.25■□□□□ 0.51
VPS53-211ENST00000571805 IGHV2-26A0A0B4J1V2 119 aa18.25■□□□□ 0.51
VPS53-211ENST00000571805 TBR1Q16650 682 aa18.25■□□□□ 0.51
VPS53-211ENST00000571805 SSBP3Q9BWW4 388 aaPredicted RBP18.25■□□□□ 0.51
VPS53-211ENST00000571805 POLEQ07864 2286 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 BMPR1BO00238 502 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 HLA-DQA1P01909 254 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 ORM2P19652 201 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 CDKN1AP38936 164 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 RPL27AP46776 148 aaKnown RBP18.24■□□□□ 0.51
VPS53-211ENST00000571805 TEX43Q6ZNM6 134 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 TRGV9Q99603 122 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 RALYQ9UKM9 306 aaKnown RBP18.24■□□□□ 0.51
VPS53-211ENST00000571805 B9A039 149 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 GPX1P07203 203 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 RNF224P0DH78 156 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 TNXAQ16473 311 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 TMEM116Q8NCL8 245 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 PERPQ96FX8 193 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 SAMD10Q9BYL1 202 aa18.24■□□□□ 0.51
VPS53-211ENST00000571805 BRS3P32247 399 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 TDRG1Q3Y452 100 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 TOMM20LQ6UXN7 152 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 NUDT10Q8NFP7 164 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 NUDT11Q96G61 164 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 SIGLEC9Q9Y336 463 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 EREGO14944 169 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 CASP6P55212 293 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 GNG5P63218 68 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 PRB3Q04118 309 aaPredicted RBP18.23■□□□□ 0.51
VPS53-211ENST00000571805 USF2Q15853 346 aaPredicted RBP18.23■□□□□ 0.51
VPS53-211ENST00000571805 ZNF841Q6ZN19 808 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 STXBP6Q8NFX7 210 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 OR1B1Q8NGR6 318 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 C7orf69Q9H7B7 122 aa18.23■□□□□ 0.51
VPS53-211ENST00000571805 MALRD1Q5VYJ5 2156 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 COMPP49747 757 aaPredicted RBP18.22■□□□□ 0.51
VPS53-211ENST00000571805 TMEM183BQ1AE95 376 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 LHFPL4Q7Z7J7 247 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 CBLN4Q9NTU7 201 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 EPDR1Q9UM22 224 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 RNF114Q9Y508 228 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.22■□□□□ 0.51
VPS53-211ENST00000571805 LYNX1G3V0Z9 82 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 APELAP0DMC3 54 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 LYNX1P0DP58 116 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 PRRX1P54821 245 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 SPACA3Q8IXA5 215 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 WIPF2Q8TF74 440 aaPredicted RBP18.22■□□□□ 0.51
VPS53-211ENST00000571805 GRAMD2BQ96HH9 432 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 RCHY1Q96PM5 261 aa18.22■□□□□ 0.51
VPS53-211ENST00000571805 IGHV1-3A0A0C4DH29 117 aa18.21■□□□□ 0.51
VPS53-211ENST00000571805 SIGLECL1Q8N7X8 197 aa18.21■□□□□ 0.51
VPS53-211ENST00000571805 INSIG2Q9Y5U4 225 aa18.21■□□□□ 0.51
VPS53-211ENST00000571805 BUB1B-PAK6H3BSN5 160 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 CD3EP07766 207 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 SRIP30626 198 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 FBXL7Q9UJT9 491 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 KLF12Q9Y4X4 402 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms