RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SACSQ9NZJ4 4579 aa13.1□□□□□ -0.31
CLN3-217ENST00000565354 C2orf70A6NJV1 201 aa13.1□□□□□ -0.31
CLN3-217ENST00000565354 GPX4P36969 197 aaPredicted RBP13.1□□□□□ -0.31
CLN3-217ENST00000565354 PRSS54Q6PEW0 395 aa13.1□□□□□ -0.31
CLN3-217ENST00000565354 UNQ9165/PRO28630Q6UXU0 137 aa13.1□□□□□ -0.31
CLN3-217ENST00000565354 ZNF600Q6ZNG1 722 aa13.1□□□□□ -0.31
CLN3-217ENST00000565354 MRPL36Q9P0J6 103 aaKnown RBP13.1□□□□□ -0.31
CLN3-217ENST00000565354 IGHV3OR16-8A0A075B7F1 116 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 A8MWP6 167 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 K7EPK0 472 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 SIX6O95475 246 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 FOLR2P14207 255 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 OR10J1P30954 320 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 BCAP31P51572 246 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 ELLP55199 621 aaPredicted RBP13.09□□□□□ -0.31
CLN3-217ENST00000565354 TM4SF20Q53R12 229 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 OR8G2PQ6IF36 304 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 IL34Q6ZMJ4 242 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 OR1S2Q8NGQ3 325 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 CACNG8Q8WXS5 425 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 NPIPB3Q92617 1050 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 MARC2Q969Z3 335 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 SIGLEC8Q9NYZ4 499 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 MGAT4CQ9UBM8 478 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 ALG5Q9Y673 324 aa13.09□□□□□ -0.31
CLN3-217ENST00000565354 TMEM213A2RRL7 107 aa13.08□□□□□ -0.32
CLN3-217ENST00000565354 ZNF207O43670 478 aaKnown RBP13.08□□□□□ -0.32
CLN3-217ENST00000565354 TSC22D2O75157 780 aa13.08□□□□□ -0.32
CLN3-217ENST00000565354 IGLV1-51P01701 117 aa13.08□□□□□ -0.32
CLN3-217ENST00000565354 TAS2R30P59541 319 aa13.08□□□□□ -0.32
CLN3-217ENST00000565354 CYCSP99999 105 aaKnown RBP13.08□□□□□ -0.32
CLN3-217ENST00000565354 TIGITQ495A1 244 aa13.08□□□□□ -0.32
CLN3-217ENST00000565354 CASC10Q5T4H9 136 aa13.08□□□□□ -0.32
CLN3-217ENST00000565354 TMEM116Q8NCL8 245 aa13.08□□□□□ -0.32
CLN3-217ENST00000565354 GINS3Q9BRX5 216 aa13.08□□□□□ -0.32
CLN3-217ENST00000565354 DAZ1Q9NQZ3 744 aaKnown RBP13.08□□□□□ -0.32
CLN3-217ENST00000565354 ZNF256Q9Y2P7 627 aaPredicted RBP13.08□□□□□ -0.32
CLN3-217ENST00000565354 LSM4Q9Y4Z0 139 aaKnown RBP13.08□□□□□ -0.32
CLN3-217ENST00000565354 PUS1Q9Y606 427 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLN3-217ENST00000565354 C7orf66A4D0T2 115 aa13.07□□□□□ -0.32
CLN3-217ENST00000565354 ZFP92A6NM28 416 aa13.07□□□□□ -0.32
CLN3-217ENST00000565354 CBLN1P23435 193 aa13.07□□□□□ -0.32
CLN3-217ENST00000565354 RAB32Q13637 225 aa13.07□□□□□ -0.32
CLN3-217ENST00000565354 LCN12Q6JVE5 192 aa13.07□□□□□ -0.32
CLN3-217ENST00000565354 MUC7Q8TAX7 377 aa13.07□□□□□ -0.32
CLN3-217ENST00000565354 TECRQ9NZ01 308 aaKnown RBP13.07□□□□□ -0.32
CLN3-217ENST00000565354 MRPL27Q9P0M9 148 aaKnown RBP13.07□□□□□ -0.32
CLN3-217ENST00000565354 DNAH1Q9P2D7 4330 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 HUWE1Q7Z6Z7 4374 aaKnown RBP13.06□□□□□ -0.32
CLN3-217ENST00000565354 SMCO3A2RU48 225 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 K7EMT4 169 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 RLN2P04090 185 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 METTL15P1P0C7V9 234 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 IGLC1P0CG04 106 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 EDN2P20800 178 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 CAV2P51636 162 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 PAX9P55771 341 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 AKR1C1Q04828 323 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 GAMTQ14353 236 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 TOMM20LQ6UXN7 152 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 OR2K2Q8NGT1 345 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 Q8WTZ3 238 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 PRR25Q96S07 402 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 NMES1Q9C002 83 aa13.06□□□□□ -0.32
CLN3-217ENST00000565354 FABP1P07148 127 aa13.05□□□□□ -0.32
CLN3-217ENST00000565354 LRRC37A5PQ49AS3 106 aa13.05□□□□□ -0.32
CLN3-217ENST00000565354 BTNL8Q6UX41 500 aa13.05□□□□□ -0.32
CLN3-217ENST00000565354 TMEM14EPQ6UXP3 125 aa13.05□□□□□ -0.32
CLN3-217ENST00000565354 ACOT7LQ6ZUV0 252 aa13.05□□□□□ -0.32
CLN3-217ENST00000565354 OR10P1Q8NGE3 313 aa13.05□□□□□ -0.32
CLN3-217ENST00000565354 MED28Q9H204 178 aa13.05□□□□□ -0.32
CLN3-217ENST00000565354 TRAV14DV4A0A0A6YYC5 116 aa13.04□□□□□ -0.32
CLN3-217ENST00000565354 IGKV1-17P01599 117 aa13.04□□□□□ -0.32
CLN3-217ENST00000565354 GP9P14770 177 aa13.04□□□□□ -0.32
CLN3-217ENST00000565354 BMI1P35226 326 aa13.04□□□□□ -0.32
CLN3-217ENST00000565354 YPEL3P61236 119 aaPredicted RBP13.04□□□□□ -0.32
CLN3-217ENST00000565354 RRAS2P62070 204 aaPredicted RBP13.04□□□□□ -0.32
CLN3-217ENST00000565354 ADAMTSL5Q6ZMM2 481 aa13.04□□□□□ -0.32
CLN3-217ENST00000565354 NARS2Q96I59 477 aaKnown RBP13.04□□□□□ -0.32
CLN3-217ENST00000565354 ASCL2Q99929 193 aa13.04□□□□□ -0.32
CLN3-217ENST00000565354 SELENOKQ9Y6D0 94 aa13.04□□□□□ -0.32
CLN3-217ENST00000565354 SCAF4O95104 1147 aaKnown RBP13.03□□□□□ -0.32
CLN3-217ENST00000565354 RD3LP0DJH9 198 aa13.03□□□□□ -0.32
CLN3-217ENST00000565354 IL15RAQ13261 267 aa13.03□□□□□ -0.32
CLN3-217ENST00000565354 GUCA2BQ16661 112 aa13.03□□□□□ -0.32
CLN3-217ENST00000565354 DEFB114Q30KQ6 69 aa13.03□□□□□ -0.32
CLN3-217ENST00000565354 CD300EQ496F6 205 aaPredicted RBP13.03□□□□□ -0.32
CLN3-217ENST00000565354 RBPMS2Q6ZRY4 209 aaKnown RBP13.03□□□□□ -0.32
CLN3-217ENST00000565354 METTL26Q96S19 204 aa13.03□□□□□ -0.32
CLN3-217ENST00000565354 MLXQ9UH92 298 aa13.03□□□□□ -0.32
CLN3-217ENST00000565354 CSMD3Q7Z407 3707 aa13.02□□□□□ -0.32
CLN3-217ENST00000565354 IGHV3-49A0A0A0MS15 119 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 IGHV7-4-1A0A0J9YVY3 117 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 FAM24AA6NFZ4 105 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 PRSS46E5RG02 174 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 CCNKO75909 580 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 TOMM40O96008 361 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 PET100P0DJ07 73 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 C8orf88P0DMB2 117 aa13.02□□□□□ -0.33
CLN3-217ENST00000565354 NPPCP23582 126 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms