RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CDK2P24941 298 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 HSD11B1P28845 292 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 CD79BP40259 229 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 BTG2P78543 158 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 OR2F1Q13607 317 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 EBPQ15125 230 aaKnown RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 IGFBP7Q16270 282 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 SLC36A2Q495M3 483 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 C1orf140Q5VVS0 124 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 C3orf33Q6P1S2 294 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 SSX6Q7RTT6 188 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 OLIG3Q7RTU3 272 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 COMMD7Q86VX2 200 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 PDZD9Q8IXQ8 264 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 SLC22A24Q8N4F4 322 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 TMEM156Q8N614 296 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 TMEM229BQ8NBD8 167 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 OR11G2Q8NGC1 345 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 OR5D14Q8NGL3 314 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 OR5H2Q8NGV7 314 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 MFSD8Q8NHS3 518 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 LMX1AQ8TE12 382 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 THEM6Q8WUY1 208 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 ITLN2Q8WWU7 325 aaPredicted RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 Q96M85 177 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 RBP7Q96R05 134 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 S100A13Q99584 98 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 PDCD10Q9BUL8 212 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 CST11Q9H112 138 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 ATG5Q9H1Y0 275 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 METTL17Q9H7H0 456 aaPredicted RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 ZNF391Q9UJN7 358 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 R4GMQ9 66 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 CENPFP49454 3210 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 KNL1Q8NG31 2342 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 ASCC3Q8N3C0 2202 aaKnown RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 PI4KAP42356 2102 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 IGKV1D-42A0A075B6H8 117 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 FXYD6-FXYD2A0A087WZ82 144 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 IGKV3D-11A0A0A0MRZ8 115 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 TMED7-TICAM2A0A0A6YYA0 188 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 KIR2DS1A0A191URI9 304 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 LOC107986453A0A1B0GWG9 222 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 OR2AT4A6NND4 320 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 ZNF878C9JN71 531 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 ARPC5O15511 151 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 CD8AP01732 235 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 HLA-AP01891 365 aaKnown RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 TPT1P13693 172 aaKnown RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 IL9P15248 144 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 CD34P28906 385 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 GRPRP30550 384 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 UBE2KP61086 200 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 ZNF117Q03924 483 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 SMCO1Q147U7 214 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 GUSBP1Q15486 140 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 SURF2Q15527 256 aaPredicted RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 NNATQ16517 81 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 DEFB110Q30KQ9 67 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 LINC00303Q3SY05 128 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 MESTQ5EB52 335 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 LINC01590Q5TEZ4 76 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 GAPTQ8N292 157 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 C12orf45Q8N5I9 185 aaPredicted RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 EIF4E3Q8N5X7 224 aaKnown RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 OR4C16Q8NGL9 310 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 CCL4L1Q8NHW4 92 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 RBPMSQ93062 196 aaKnown RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 SLC25A44Q96H78 314 aaPredicted RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 TSPAN32Q96QS1 320 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 ARL6Q9H0F7 186 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 FXYD6Q9H0Q3 95 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 OR5V1Q9UGF6 321 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 NOP16Q9Y3C1 178 aaKnown RBP2.44□□□□□ -2.02
LINC00560-201ENST00000564593 HDGFL3Q9Y3E1 203 aa2.44□□□□□ -2.02
LINC00560-201ENST00000564593 SHANK1Q9Y566 2161 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 TNRC6BQ9UPQ9 1833 aaKnown RBP2.43□□□□□ -2.02
LINC00560-201ENST00000564593 LOC389332A0A1B0GUA5 103 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 TMEM269A0A1B0GVZ9 245 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 RFPL4AA6NLU0 287 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 LEUTXA8MZ59 168 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 C10orf142B7Z368 130 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 C9J4A7 227 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 RFPL4AL1F8VTS6 287 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 SLC25A4P12235 298 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 S100GP29377 79 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 SRP9P49458 86 aaKnown RBP2.43□□□□□ -2.02
LINC00560-201ENST00000564593 SNRPD2P62316 118 aaKnown RBP2.43□□□□□ -2.02
LINC00560-201ENST00000564593 INSL4Q14641 139 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 HMGN3Q15651 99 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 GLYATL3Q5SZD4 288 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 LAMTOR1Q6IAA8 161 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 Q6ZT83 130 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 SSX7Q7RTT5 188 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 TMED4Q7Z7H5 227 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 LYG2Q86SG7 212 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 PLPP5Q8NEB5 264 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 OR6K3Q8NGY3 331 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 PP6455Q8WZ26 134 aa2.43□□□□□ -2.02
LINC00560-201ENST00000564593 ARL11Q969Q4 196 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms