RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TERB2Q8NHR7 220 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 ZFAND1Q8TCF1 268 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 MARCH1Q8TCQ1 289 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 Q8WTZ3 238 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 ABHD1Q96SE0 405 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 SCRT1Q9BWW7 348 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 EXTL2Q9UBQ6 330 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 MTFP1Q9UDX5 166 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 RPS10-NUDT3A0A1W2PQS6 291 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 HELTA6NFD8 242 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 TNFAIP8O95379 198 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 HNRNPCP07910 306 aaKnown RBP eCLIP12.15□□□□□ -0.46
CLN3-211ENST00000564091 OR10J1P30954 320 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 HTR2BP41595 481 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 DHODHQ02127 395 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 OR1S2Q8NGQ3 325 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 LHFPL5Q8TAF8 219 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 GLMPQ8WWB7 406 aa12.15□□□□□ -0.46
CLN3-211ENST00000564091 HEYLQ9NQ87 328 aaPredicted RBP12.15□□□□□ -0.46
CLN3-211ENST00000564091 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.15□□□□□ -0.46
CLN3-211ENST00000564091 DEFB131BA0A096LNP1 70 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 CD74P04233 296 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 OR5AC1P0C628 307 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 TBPP20226 339 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 EIF2B2P49770 351 aaKnown RBP12.14□□□□□ -0.47
CLN3-211ENST00000564091 USF2Q15853 346 aaPredicted RBP12.14□□□□□ -0.47
CLN3-211ENST00000564091 AARDQ4LEZ3 155 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 MZT2AQ6P582 158 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 OR52E5Q8NH55 327 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 TMEM170AQ8WVE7 144 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 RNF126Q9BV68 326 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 TMEM222Q9H0R3 208 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 XCL2Q9UBD3 114 aa12.14□□□□□ -0.47
CLN3-211ENST00000564091 FAM90A26D6RGX4 464 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 CDS2O95674 445 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 RAB3DO95716 219 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 AP2S1P53680 142 aaPredicted RBP12.13□□□□□ -0.47
CLN3-211ENST00000564091 YPEL3P61236 119 aaPredicted RBP12.13□□□□□ -0.47
CLN3-211ENST00000564091 FAAP20Q6NZ36 180 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 SELENOHQ8IZQ5 122 aaKnown RBP12.13□□□□□ -0.47
CLN3-211ENST00000564091 TMEM229BQ8NBD8 167 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 GLYATL2Q8WU03 294 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 GPR146Q96CH1 333 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 RTBDNQ9BSG5 229 aaPredicted RBP12.13□□□□□ -0.47
CLN3-211ENST00000564091 NAA50Q9GZZ1 169 aaKnown RBP12.13□□□□□ -0.47
CLN3-211ENST00000564091 CACNG5Q9UF02 275 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 AGRNO00468 2067 aa12.13□□□□□ -0.47
CLN3-211ENST00000564091 CEBPZOSA8MTT3 80 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 NXPH3O95157 252 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 IL4P05112 153 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 SLC25A4P12235 298 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 TAS2R19P59542 299 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 MEF2DQ14814 521 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 C2orf83Q53S99 150 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 STEAP1BQ6NZ63 245 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 FAM219AQ8IW50 185 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 SLC24A4Q8NFF2 622 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 RNASEH2CQ8TDP1 164 aaKnown RBP12.12□□□□□ -0.47
CLN3-211ENST00000564091 AP3S1Q92572 193 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 NPIPB3Q92617 1050 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 ABCA13Q86UQ4 5058 aa12.12□□□□□ -0.47
CLN3-211ENST00000564091 TEX13DA0A0J9YY54 714 aaPredicted RBP12.11□□□□□ -0.47
CLN3-211ENST00000564091 H3BMM0 161 aa12.11□□□□□ -0.47
CLN3-211ENST00000564091 B3GALNT1O75752 331 aa12.11□□□□□ -0.47
CLN3-211ENST00000564091 ZNF182P17025 639 aaPredicted RBP12.11□□□□□ -0.47
CLN3-211ENST00000564091 SNRPD3P62318 126 aaKnown RBP12.11□□□□□ -0.47
CLN3-211ENST00000564091 LINC00336Q6ZUF6 198 aa12.11□□□□□ -0.47
CLN3-211ENST00000564091 RBPMSQ93062 196 aaKnown RBP12.11□□□□□ -0.47
CLN3-211ENST00000564091 ACY3Q96HD9 319 aa12.11□□□□□ -0.47
CLN3-211ENST00000564091 NAA60Q9H7X0 242 aa12.11□□□□□ -0.47
CLN3-211ENST00000564091 NRN1Q9NPD7 142 aa12.11□□□□□ -0.47
CLN3-211ENST00000564091 A0A1B0GVY2 172 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 M0R2N4 97 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 BUB3O43684 328 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 AMBPP02760 352 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 RD3LP0DJH9 198 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 DEFB1P60022 68 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 NUTF2P61970 127 aaKnown RBP12.1□□□□□ -0.47
CLN3-211ENST00000564091 CTF1Q16619 201 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 TMEM268Q5VZI3 342 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 SIGLEC15Q6ZMC9 328 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 POM121L12Q8N7R1 296 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 C1QTNF4Q9BXJ3 329 aa12.1□□□□□ -0.47
CLN3-211ENST00000564091 C14orf166Q9Y224 244 aaKnown RBP12.1□□□□□ -0.47
CLN3-211ENST00000564091 PKD1P98161 4303 aa12.09□□□□□ -0.47
CLN3-211ENST00000564091 NPY1RP25929 384 aa12.09□□□□□ -0.47
CLN3-211ENST00000564091 EMP1P54849 157 aa12.09□□□□□ -0.47
CLN3-211ENST00000564091 NDUFAF3Q9BU61 184 aa12.09□□□□□ -0.47
CLN3-211ENST00000564091 PRR13Q9NZ81 148 aa12.09□□□□□ -0.47
CLN3-211ENST00000564091 GABARAPH6UMI1 98 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 GABARAPO95166 117 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 TOMM40O96008 361 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 IGKV3-20P01619 116 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 P0DMU3 169 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 FAM231AP0DMU4 169 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 FAM231CP0DMU5 169 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 PSG1P11464 419 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 FXYD7P58549 80 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 GDF5OSQ5U4N7 250 aa12.08□□□□□ -0.48
CLN3-211ENST00000564091 ETFRF1Q6IPR1 90 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms