RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 IGHV1-46P01743 117 aa14.18□□□□□ -0.14
SYNE3-202ENST00000553340 WT1-ASQ06250 92 aa14.18□□□□□ -0.14
SYNE3-202ENST00000553340 TMEM177Q53S58 311 aa14.18□□□□□ -0.14
SYNE3-202ENST00000553340 UNQ5815/PRO19632Q6UWF5 114 aa14.18□□□□□ -0.14
SYNE3-202ENST00000553340 OR2D3Q8NGH3 330 aa14.18□□□□□ -0.14
SYNE3-202ENST00000553340 ZNF596Q8TC21 504 aa14.18□□□□□ -0.14
SYNE3-202ENST00000553340 ASCL3Q9NQ33 180 aa14.18□□□□□ -0.14
SYNE3-202ENST00000553340 EPDR1Q9UM22 224 aa14.18□□□□□ -0.14
SYNE3-202ENST00000553340 DSPP15924 2871 aaKnown RBP14.18□□□□□ -0.14
SYNE3-202ENST00000553340 MYCNOSP40205 109 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 PCP4P48539 62 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 IGFL2Q6UWQ7 119 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 LINC00305Q7Z4B0 112 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 STXBP6Q8NFX7 210 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 OR5AN1Q8NGI8 311 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 VSTM2AQ8TAG5 236 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 SMIM12Q96EX1 92 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 TMEM70Q9BUB7 260 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 GAL3ST2Q9H3Q3 398 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 IGKV1D-37A0A075B6S9 117 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 VWC2LB2RUY7 222 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 FSTL3O95633 263 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 TOMM40O96008 361 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 SLC25A5P05141 298 aaKnown RBP14.17□□□□□ -0.14
SYNE3-202ENST00000553340 TNFSF4P23510 183 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 CA7P43166 264 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 LEMD1Q68G75 181 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 ZNF841Q6ZN19 808 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 SEM1Q6ZVN7 128 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 THAP8Q8NA92 274 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 TMEM167AQ8TBQ9 72 aa14.17□□□□□ -0.14
SYNE3-202ENST00000553340 IGHV1-69-2A0A0G2JMI3 117 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 MBD3L4A6NDZ8 208 aaPredicted RBP14.16□□□□□ -0.14
SYNE3-202ENST00000553340 MBD3L3A6NE82 208 aaPredicted RBP14.16□□□□□ -0.14
SYNE3-202ENST00000553340 MBD3L5A6NJ08 208 aaPredicted RBP14.16□□□□□ -0.14
SYNE3-202ENST00000553340 IGHV3-48P01763 117 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 HBBP68871 147 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 UBE2V1Q13404 147 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 PLA2G2CQ5R387 149 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 OR4F17Q8NGA8 305 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 OR4A5Q8NH83 315 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 MBD3L2Q8NHZ7 208 aaPredicted RBP14.16□□□□□ -0.14
SYNE3-202ENST00000553340 PLAUP00749 431 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 OR4C13Q8NGP0 309 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 GPR82Q96P67 336 aa14.16□□□□□ -0.14
SYNE3-202ENST00000553340 IGLC7A0M8Q6 106 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 REG1BP48304 166 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 C3orf36Q3SXR2 165 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 ZNF474Q6S9Z5 364 aaPredicted RBP14.15□□□□□ -0.14
SYNE3-202ENST00000553340 MUC15Q8N387 334 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 SSUH2Q9Y2M2 353 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 NCOR1O75376 2440 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 PGPA6NDG6 321 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 C21orf62-AS1Q17RA5 79 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 Q6ZVH6 145 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 TCF24Q7RTU0 167 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 KIR3DL3Q8N743 410 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 BLNKQ8WV28 456 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 PERPQ96FX8 193 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 SGK494Q96LW2 274 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 RPP21Q9H633 154 aaKnown RBP14.15□□□□□ -0.14
SYNE3-202ENST00000553340 CLEC5AQ9NY25 188 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 KLF12Q9Y4X4 402 aa14.15□□□□□ -0.14
SYNE3-202ENST00000553340 ICE1Q9Y2F5 2266 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 NKX6-3A6NJ46 265 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 CGB1A6NKQ9 187 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 SP9P0CG40 484 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 SRSF6Q13247 344 aaKnown RBP14.14□□□□□ -0.15
SYNE3-202ENST00000553340 C10orf55Q5SWW7 151 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 TEX36Q5VZQ5 186 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 SSX8Q7RTT4 187 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 URB1-AS1Q96HZ7 61 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 COL6A3P12111 3177 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 A8MWL6 223 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 SPATA12Q7Z6I5 190 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 MUC3AQ02505 3323 aa14.14□□□□□ -0.15
SYNE3-202ENST00000553340 OR4C46A6NHA9 309 aa14.13□□□□□ -0.15
SYNE3-202ENST00000553340 ORM2P19652 201 aa14.13□□□□□ -0.15
SYNE3-202ENST00000553340 LOXL4Q96JB6 756 aa14.13□□□□□ -0.15
SYNE3-202ENST00000553340 MLST8Q9BVC4 326 aa14.13□□□□□ -0.15
SYNE3-202ENST00000553340 MRPL36Q9P0J6 103 aaKnown RBP14.13□□□□□ -0.15
SYNE3-202ENST00000553340 RPH3ALQ9UNE2 315 aa14.13□□□□□ -0.15
SYNE3-202ENST00000553340 SOX21Q9Y651 276 aaPredicted RBP14.13□□□□□ -0.15
SYNE3-202ENST00000553340 CRXO43186 299 aaPredicted RBP14.13□□□□□ -0.15
SYNE3-202ENST00000553340 MOSP00540 346 aa14.13□□□□□ -0.15
SYNE3-202ENST00000553340 MEF2CQ06413 473 aaPredicted RBP14.13□□□□□ -0.15
SYNE3-202ENST00000553340 ZCCHC24Q8N2G6 241 aaKnown RBP14.13□□□□□ -0.15
SYNE3-202ENST00000553340 CHCHD1Q96BP2 118 aaKnown RBP14.13□□□□□ -0.15
SYNE3-202ENST00000553340 FOXA3P55318 350 aaPredicted RBP14.12□□□□□ -0.15
SYNE3-202ENST00000553340 CT83Q5H943 113 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 OR1B1Q8NGR6 318 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 PRSS22Q9GZN4 317 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 C1RLQ9NZP8 487 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 DYSFO75923 2080 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 SVILO95425 2214 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 P01737 135 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 NBEAP1P0C6P0 100 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 CCL3L1P16619 93 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 FAM120AOSQ5T036 256 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 OR10X1Q8NGY0 326 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms