RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 MRPS26Q9BYN8 205 aaKnown RBP13.01□□□□□ -0.33
PCF11-206ENST00000533018 KNCNA6PVL3 124 aa13□□□□□ -0.33
PCF11-206ENST00000533018 DEDDO75618 318 aa13□□□□□ -0.33
PCF11-206ENST00000533018 OR10J1P30954 320 aa13□□□□□ -0.33
PCF11-206ENST00000533018 DHRS2Q13268 280 aa13□□□□□ -0.33
PCF11-206ENST00000533018 SPCS2Q15005 226 aa13□□□□□ -0.33
PCF11-206ENST00000533018 ACTL10Q5JWF8 245 aa13□□□□□ -0.33
PCF11-206ENST00000533018 LGALS9CQ6DKI2 356 aa13□□□□□ -0.33
PCF11-206ENST00000533018 PRSS54Q6PEW0 395 aa13□□□□□ -0.33
PCF11-206ENST00000533018 OR4C16Q8NGL9 310 aa13□□□□□ -0.33
PCF11-206ENST00000533018 OR1S2Q8NGQ3 325 aa13□□□□□ -0.33
PCF11-206ENST00000533018 SMIM4Q8WVI0 70 aa13□□□□□ -0.33
PCF11-206ENST00000533018 CRYM-AS1A6NIL9 109 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 IGLC1P0CG04 106 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 SLC25A4P12235 298 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 AARDQ4LEZ3 155 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 C2orf83Q53S99 150 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 ETFRF1Q6IPR1 90 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 CLVS1Q8IUQ0 354 aaPredicted RBP12.99□□□□□ -0.33
PCF11-206ENST00000533018 OR51S1Q8NGJ8 323 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 RNASEH2CQ8TDP1 164 aaKnown RBP12.99□□□□□ -0.33
PCF11-206ENST00000533018 C2CD4CQ8TF44 421 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 PRRT1Q99946 306 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 GPR132Q9UNW8 380 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 KCNIP3Q9Y2W7 256 aa12.99□□□□□ -0.33
PCF11-206ENST00000533018 HELTA6NFD8 242 aa12.98□□□□□ -0.33
PCF11-206ENST00000533018 HNRNPCP07910 306 aaKnown RBP eCLIP12.98□□□□□ -0.33
PCF11-206ENST00000533018 SPP1P10451 314 aa12.98□□□□□ -0.33
PCF11-206ENST00000533018 AP2S1P53680 142 aaPredicted RBP12.98□□□□□ -0.33
PCF11-206ENST00000533018 TMEM41BQ5BJD5 291 aa12.98□□□□□ -0.33
PCF11-206ENST00000533018 MORN3Q6PF18 240 aaPredicted RBP12.98□□□□□ -0.33
PCF11-206ENST00000533018 TRPT1Q86TN4 253 aaKnown RBP12.98□□□□□ -0.33
PCF11-206ENST00000533018 CENPSQ8N2Z9 138 aa12.98□□□□□ -0.33
PCF11-206ENST00000533018 ACY3Q96HD9 319 aa12.98□□□□□ -0.33
PCF11-206ENST00000533018 CLEC5AQ9NY25 188 aa12.98□□□□□ -0.33
PCF11-206ENST00000533018 PRR13Q9NZ81 148 aa12.98□□□□□ -0.33
PCF11-206ENST00000533018 IFNA10P01566 189 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 IL4P05112 153 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 SULT1A3P0DMM9 295 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 SULT1A4P0DMN0 295 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 NPY1RP25929 384 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 YPEL3P61236 119 aaPredicted RBP12.97□□□□□ -0.33
PCF11-206ENST00000533018 PSMG4Q5JS54 123 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 NOXA1Q86UR1 476 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 DCANP1Q8TF63 244 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 NPIPB3Q92617 1050 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 MCUBQ9NWR8 336 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 SCP2D1Q9UJQ7 156 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 TMEM56-RWDD3S4R434 201 aa12.97□□□□□ -0.33
PCF11-206ENST00000533018 DNAH10Q8IVF4 4471 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 IGHV4-28A0A0C4DH34 117 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 IGLL5B9A064 214 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 CTDSPLO15194 276 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 RD3LP0DJH9 198 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 AKR1C4P17516 323 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 ALDH3B2P48448 385 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 C16orf54Q6UWD8 224 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 SCGB3A2Q96PL1 93 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 RABL2AQ9UBK7 228 aaPredicted RBP12.96□□□□□ -0.33
PCF11-206ENST00000533018 CACFD1Q9UGQ2 172 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 RABL2BQ9UNT1 228 aa12.96□□□□□ -0.33
PCF11-206ENST00000533018 GIG44P09565 113 aaPredicted RBP12.95□□□□□ -0.34
PCF11-206ENST00000533018 MIFP14174 115 aa12.95□□□□□ -0.34
PCF11-206ENST00000533018 C4BPBP20851 252 aa12.95□□□□□ -0.34
PCF11-206ENST00000533018 SNRPD3P62318 126 aaKnown RBP12.95□□□□□ -0.34
PCF11-206ENST00000533018 USF2Q15853 346 aaPredicted RBP12.95□□□□□ -0.34
PCF11-206ENST00000533018 Q8NAQ8 132 aa12.95□□□□□ -0.34
PCF11-206ENST00000533018 TMEM170AQ8WVE7 144 aa12.95□□□□□ -0.34
PCF11-206ENST00000533018 GLMPQ8WWB7 406 aa12.95□□□□□ -0.34
PCF11-206ENST00000533018 RAB40CQ96S21 281 aa12.95□□□□□ -0.34
PCF11-206ENST00000533018 U3KQE9 123 aa12.95□□□□□ -0.34
PCF11-206ENST00000533018 ANKRD20A5PA0PJZ0 165 aa12.94□□□□□ -0.34
PCF11-206ENST00000533018 C11orf94C9JXX5 98 aa12.94□□□□□ -0.34
PCF11-206ENST00000533018 RBMY1A1P0DJD3 496 aaKnown RBP12.94□□□□□ -0.34
PCF11-206ENST00000533018 RBMY1CP0DJD4 496 aa12.94□□□□□ -0.34
PCF11-206ENST00000533018 RBMY1FQ15415 496 aaKnown RBP12.94□□□□□ -0.34
PCF11-206ENST00000533018 DTD1Q8TEA8 209 aa12.94□□□□□ -0.34
PCF11-206ENST00000533018 RAB2BQ8WUD1 216 aa12.94□□□□□ -0.34
PCF11-206ENST00000533018 IL22RA2Q969J5 263 aa12.94□□□□□ -0.34
PCF11-206ENST00000533018 CCDC59Q9P031 241 aaKnown RBP12.94□□□□□ -0.34
PCF11-206ENST00000533018 VPS13DQ5THJ4 4388 aa12.94□□□□□ -0.34
PCF11-206ENST00000533018 TOMM40O96008 361 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 ANXA3P12429 323 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 TCTAP57738 103 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 SMCO1Q147U7 214 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 NMSQ5H8A3 153 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 SIGLEC15Q6ZMC9 328 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 LYZL2Q7Z4W2 148 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 LGI3Q8N145 548 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 DYNC2LI1Q8TCX1 351 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 PBDC1Q9BVG4 233 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 NRN1Q9NPD7 142 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 RSL24D1Q9UHA3 163 aaKnown RBP12.93□□□□□ -0.34
PCF11-206ENST00000533018 TBC1D24Q9ULP9 559 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 U3KQ87 197 aa12.93□□□□□ -0.34
PCF11-206ENST00000533018 GSTZ1O43708 216 aaPredicted RBP12.92□□□□□ -0.34
PCF11-206ENST00000533018 NOL3O60936 208 aaKnown RBP12.92□□□□□ -0.34
PCF11-206ENST00000533018 PSG1P11464 419 aa12.92□□□□□ -0.34
PCF11-206ENST00000533018 HLA-DMBP28068 263 aa12.92□□□□□ -0.34
PCF11-206ENST00000533018 CCR6P51684 374 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms