RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PTPRQQ9UMZ3 2332 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 POLEQ07864 2286 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 PEX7O00628 323 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 IGLV2-8P01709 118 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 SFTPCP11686 197 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 CNTFRP26992 372 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 ADMP35318 185 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 MFAP2P55001 183 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 CX3CL1P78423 397 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 NHLH1Q02575 133 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 OR5I1Q13606 314 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 IBA57Q5T440 356 aaKnown RBP11.88□□□□□ -0.51
NUP54-217ENST00000514987 C11orf71Q6IPW1 123 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 C1orf122Q6ZSJ8 110 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 FAM231DQ6ZW35 169 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 SRSF12Q8WXF0 261 aaKnown RBP11.88□□□□□ -0.51
NUP54-217ENST00000514987 MRPL18Q9H0U6 180 aaKnown RBP11.88□□□□□ -0.51
NUP54-217ENST00000514987 ROS1P08922 2347 aa11.88□□□□□ -0.51
NUP54-217ENST00000514987 PKDREJQ9NTG1 2253 aa11.87□□□□□ -0.51
NUP54-217ENST00000514987 TSTD3H0UI37 97 aa11.87□□□□□ -0.51
NUP54-217ENST00000514987 PYYP10082 97 aa11.87□□□□□ -0.51
NUP54-217ENST00000514987 ORM2P19652 201 aa11.87□□□□□ -0.51
NUP54-217ENST00000514987 PLGLAQ15195 96 aa11.87□□□□□ -0.51
NUP54-217ENST00000514987 OR1B1Q8NGR6 318 aa11.87□□□□□ -0.51
NUP54-217ENST00000514987 PRDM13Q9H4Q3 707 aa11.87□□□□□ -0.51
NUP54-217ENST00000514987 ASPMQ8IZT6 3477 aa11.86□□□□□ -0.51
NUP54-217ENST00000514987 LOC105371242A0A075B767 164 aa11.86□□□□□ -0.51
NUP54-217ENST00000514987 IGHV3-48P01763 117 aa11.86□□□□□ -0.51
NUP54-217ENST00000514987 MGST1P10620 155 aaKnown RBP11.86□□□□□ -0.51
NUP54-217ENST00000514987 MYCNOSP40205 109 aa11.86□□□□□ -0.51
NUP54-217ENST00000514987 OR8I2Q8N0Y5 310 aa11.86□□□□□ -0.51
NUP54-217ENST00000514987 SSBP3Q9BWW4 388 aaPredicted RBP11.86□□□□□ -0.51
NUP54-217ENST00000514987 FBXL15Q9H469 300 aa11.86□□□□□ -0.51
NUP54-217ENST00000514987 SMIM27A0A1W2PRY6 76 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 OOSP1A8MZH6 123 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 FCN1O00602 326 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 TIMM23O14925 209 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 GZMBP10144 247 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 CRISP2P16562 243 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 PRTN3P24158 256 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 PAFAH1B2P68402 229 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 TMEM183BQ1AE95 376 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 RASL11AQ6T310 242 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 DTX2Q86UW9 622 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 BAGE2Q86Y30 109 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 KIR3DL3Q8N743 410 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 NPBQ8NG41 125 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 EPDR1Q9UM22 224 aa11.85□□□□□ -0.51
NUP54-217ENST00000514987 NBR2O15453 112 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 GATCO43716 136 aaKnown RBP11.84□□□□□ -0.51
NUP54-217ENST00000514987 CNIH1O95406 144 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 MOSP00540 346 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 NBEAP1P0C6P0 100 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 ESDP10768 282 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 CBLN1P23435 193 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 GPR6P46095 362 aaPredicted RBP11.84□□□□□ -0.51
NUP54-217ENST00000514987 IER3P46695 156 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 Q0VG73 95 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 CCDC144NLQ6NUI1 221 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 RNASE7Q9H1E1 156 aaKnown RBP11.84□□□□□ -0.51
NUP54-217ENST00000514987 TMEM14CQ9P0S9 112 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 RNF24Q9Y225 148 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 HIGD1AQ9Y241 93 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 KLF12Q9Y4X4 402 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 IZUMO1RA6ND01 250 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 ZNF705GA8MUZ8 300 aaPredicted RBP11.84□□□□□ -0.51
NUP54-217ENST00000514987 ODF3BA8MYP8 253 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 SNURFLB1AK76 121 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 I3L2K1 104 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 IGLC1P0CG04 106 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 DLX1P56177 255 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 UBE2G1P62253 170 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 RANP62826 216 aaKnown RBP11.84□□□□□ -0.51
NUP54-217ENST00000514987 IQCJQ1A5X6 159 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 S100A7AQ86SG5 101 aa11.84□□□□□ -0.51
NUP54-217ENST00000514987 RBM14Q96PK6 669 aaKnown RBP11.84□□□□□ -0.51
NUP54-217ENST00000514987 MALRD1Q5VYJ5 2156 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 NBEAQ8NFP9 2946 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 PIEZO2Q9H5I5 2752 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 TRAV20A0A0B4J274 112 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 NDUFA3O95167 84 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 HLA-DQA1P01909 254 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 AMY1AP04745 511 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 SLC25A5P05141 298 aaKnown RBP11.83□□□□□ -0.52
NUP54-217ENST00000514987 ARF6P62330 175 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 CDSNQ15517 529 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 MMDQ15546 238 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 CDPF1Q6NVV7 123 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 C5orf17Q8NAS9 161 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 CMTM2Q8TAZ6 248 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 CFHR4Q92496 578 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 GRAMD2BQ96HH9 432 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 RASL11BQ9BPW5 248 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 WNT10AQ9GZT5 417 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 SERTAD4Q9NUC0 356 aa11.83□□□□□ -0.52
NUP54-217ENST00000514987 HIST1H1EP10412 219 aaKnown RBP11.82□□□□□ -0.52
NUP54-217ENST00000514987 GP9P14770 177 aa11.82□□□□□ -0.52
NUP54-217ENST00000514987 TPPP2P59282 170 aa11.82□□□□□ -0.52
NUP54-217ENST00000514987 DEFA6Q01524 100 aa11.82□□□□□ -0.52
NUP54-217ENST00000514987 FMC1Q96HJ9 113 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms