RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TSPAN4O14817 238 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 CTDSPLO15194 276 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 MT-CO2P00403 227 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 IFNA17P01571 189 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 IGKV1-5P01602 117 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 CTSDP07339 412 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 CTSGP08311 255 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 P0C879 139 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 FCGR2BP31994 310 aaPredicted RBP5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 SNCAP37840 140 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 TMBIM6P55061 237 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 COTL1Q14019 142 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 IL18Q14116 193 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 IZUMO4Q1ZYL8 232 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 SMUG1Q53HV7 270 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 LAMTOR1Q6IAA8 161 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 RNASE11Q8TAA1 199 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 MARCH1Q8TCQ1 289 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 SMIM4Q8WVI0 70 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 PINX1Q96BK5 328 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 CHRDL1Q9BU40 450 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 GGTLC1Q9BX51 225 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 ENY2Q9NPA8 101 aa5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 C14orf166Q9Y224 244 aaKnown RBP5.07□□□□□ -1.6
CCDC88A-213ENST00000476903 TRAV6A0A075B6T7 132 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 IGHV3OR16-8A0A075B7F1 116 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 LOC102724200A0A096LPH7 203 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 A0A0B4J293 547 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 TEX13DA0A0J9YY54 714 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 INS-IGF2F8WCM5 200 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 CORTO00230 105 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 ST8SIA3O43173 380 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 ZNF207O43670 478 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 GNG7O60262 68 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 YIF1AO95070 293 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 SCGB1D1O95968 90 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 AKAIN1P0CW23 69 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 UCP1P25874 307 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 NPBWR1P48145 328 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 HOXA1P49639 335 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 SUB1P53999 127 aaKnown RBP eCLIP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 SURF2Q15527 256 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 SP6Q3SY56 376 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 SPINK9Q5DT21 86 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 ZFAND6Q6FIF0 208 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 FAAP20Q6NZ36 180 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 PET117Q6UWS5 81 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 FAM219AQ8IW50 185 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 DUSP18Q8NEJ0 188 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 DYNC2LI1Q8TCX1 351 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 RRNAD1Q96FB5 475 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 DIRAS2Q96HU8 199 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 OR10C1Q96KK4 312 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 PRRT1Q99946 306 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 FAM110AQ9BQ89 295 aa5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 C6orf62Q9GZU0 229 aaPredicted RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 NXF2Q9GZY0 626 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 RSL24D1Q9UHA3 163 aaKnown RBP5.06□□□□□ -1.6
CCDC88A-213ENST00000476903 TRAV14DV4A0A0A6YYC5 116 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 IGHV7-4-1A0A0J9YVY3 117 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 OR4C46A6NHA9 309 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 CHEK1O14757 476 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 GSTZ1O43708 216 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 SCGB2A1O75556 95 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 CDS2O95674 445 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 IGHV3-48P01763 117 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 OR5AC1P0C628 307 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 BMI1P35226 326 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 RPL5P46777 297 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 APOC4P55056 127 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 DHODHQ02127 395 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 TMEM116Q8NCL8 245 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 OR4C16Q8NGL9 310 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 RBPMSQ93062 196 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 GINS3Q9BRX5 216 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 RTBDNQ9BSG5 229 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 TMEM222Q9H0R3 208 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 NAA60Q9H7X0 242 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 UBQLN2Q9UHD9 624 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 SMPXQ9UHP9 88 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 SCP2D1Q9UJQ7 156 aa5.05□□□□□ -1.6
CCDC88A-213ENST00000476903 A0A0G2JRQ6 117 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 ANKRD20A5PA0PJZ0 165 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 FABP12A6NFH5 140 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 CRYM-AS1A6NIL9 109 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 H3BMQ9 156 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 CD5P06127 495 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 RNASE2P10153 161 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 OPRK1P41145 380 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 ETV6P41212 452 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 CMC4P56277 68 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 SPCS3P61009 180 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 RGS21Q2M5E4 152 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 ODF3L2Q3SX64 289 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 PVRIGQ6DKI7 326 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 OR51S1Q8NGJ8 323 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 OR52E5Q8NH55 327 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 ENKURQ8TC29 256 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 GLYATL2Q8WU03 294 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 ZNF414Q96IQ9 312 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms