RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 OCIAD1Q9NX40 245 aa11.24□□□□□ -0.61
HDAC1-206ENST00000476391 hADV38S2A0JD32 116 aa11.24□□□□□ -0.61
HDAC1-206ENST00000476391 CCL2P13500 99 aa11.24□□□□□ -0.61
HDAC1-206ENST00000476391 GCSHP23434 173 aa11.24□□□□□ -0.61
HDAC1-206ENST00000476391 ZNF137PP52743 207 aa11.24□□□□□ -0.61
HDAC1-206ENST00000476391 BCL6BQ8N143 479 aaPredicted RBP11.24□□□□□ -0.61
HDAC1-206ENST00000476391 Q8TCH9 128 aa11.24□□□□□ -0.61
HDAC1-206ENST00000476391 ARPC1AQ92747 370 aa11.24□□□□□ -0.61
HDAC1-206ENST00000476391 SLC25A2Q9BXI2 301 aa11.24□□□□□ -0.61
HDAC1-206ENST00000476391 CEP192Q8TEP8 1941 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 SRRM4A7MD48 611 aaKnown RBP11.23□□□□□ -0.61
HDAC1-206ENST00000476391 HAX1O00165 279 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 CSN3P07498 182 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 SPINK8P0C7L1 97 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 SPINK2P20155 84 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 FXYD2P54710 66 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 INO80CQ6PI98 192 aaPredicted RBP11.23□□□□□ -0.61
HDAC1-206ENST00000476391 PLXDC1Q8IUK5 500 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 PIFOQ8TCI5 191 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 C18orf15Q96N68 181 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 ENY2Q9NPA8 101 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 TMEM140Q9NV12 185 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 ZNF492Q9P255 531 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 C15orf61A6NNL5 157 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 P01737 135 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 KLRD1Q13241 179 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 TMEM177Q53S58 311 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 SHISA2Q6UWI4 295 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 MLST8Q9BVC4 326 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 SS18L2Q9UHA2 77 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 LINC00312Q9Y6C7 94 aa11.23□□□□□ -0.61
HDAC1-206ENST00000476391 TRAV3A0A0B4J244 114 aa11.22□□□□□ -0.61
HDAC1-206ENST00000476391 NKX2-8O15522 239 aa11.22□□□□□ -0.61
HDAC1-206ENST00000476391 RPS19BP1Q86WX3 136 aaKnown RBP11.22□□□□□ -0.61
HDAC1-206ENST00000476391 PCP2Q8IVA1 136 aa11.22□□□□□ -0.61
HDAC1-206ENST00000476391 OR8A1Q8NGG7 326 aa11.22□□□□□ -0.61
HDAC1-206ENST00000476391 RTL8AQ9BWD3 113 aa11.22□□□□□ -0.61
HDAC1-206ENST00000476391 PRRG4Q9BZD6 226 aa11.22□□□□□ -0.61
HDAC1-206ENST00000476391 CACNA1DQ01668 2161 aa11.22□□□□□ -0.61
HDAC1-206ENST00000476391 IGKV1OR2-108A0A075B7D4 117 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 C19orf71A6NCJ1 209 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 PSPNO60542 156 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 NMUP48645 174 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 HSPE1P61604 102 aaKnown RBP11.21□□□□□ -0.61
HDAC1-206ENST00000476391 GAGE5Q13069 117 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 GAGE6Q13070 117 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 GAGE13Q4V321 117 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 VKORC1L1Q8N0U8 176 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 PRSS3P2Q8NHM4 247 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 FAM110AQ9BQ89 295 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 CRISPLD2Q9H0B8 497 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 KLF12Q9Y4X4 402 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 KLK10O43240 276 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 SSBP2P81877 361 aaPredicted RBP11.21□□□□□ -0.61
HDAC1-206ENST00000476391 RNF183Q96D59 192 aa11.21□□□□□ -0.61
HDAC1-206ENST00000476391 FOXA2Q9Y261 457 aaPredicted RBP11.21□□□□□ -0.61
HDAC1-206ENST00000476391 TCRBV4S1A1TA0A5B7 111 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 SLC25A17O43808 307 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 SRSF6Q13247 344 aaKnown RBP11.2□□□□□ -0.62
HDAC1-206ENST00000476391 TM2D2Q9BX73 214 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 IGHV1OR21-1A0A087WYE8 117 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 IGLL5B9A064 214 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 H3BMG7 143 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 CACNG7P62955 275 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 CFHR1Q03591 330 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 TM4SF20Q53R12 229 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 ATP6V0E2Q8NHE4 81 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 PAXXQ9BUH6 204 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 CDIP1Q9H305 208 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 TMEM14BQ9NUH8 114 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 PRO0461Q9UI25 63 aa11.2□□□□□ -0.62
HDAC1-206ENST00000476391 F11RQ9Y624 299 aaKnown RBP11.2□□□□□ -0.62
HDAC1-206ENST00000476391 A0A096LNJ9 63 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 ZNHIT1O43257 154 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 PROP1O75360 226 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 GATA3P23771 443 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 MYCNOSP40205 109 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 KIR2DS2P43631 304 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 Q6ZS92 163 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 GATD1Q8NB37 220 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 SMRP1Q8NCR6 262 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 C20orf78Q9BR46 151 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 PROK2Q9HC23 129 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 KLF13Q9Y2Y9 288 aaPredicted RBP11.19□□□□□ -0.62
HDAC1-206ENST00000476391 ADAMTS20P59510 1910 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 NPIPB6E9PJ23 425 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 K7ERJ3 54 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 CXCL13O43927 109 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 CCL3P10147 92 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 INSL3P51460 131 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 ATP5IP56385 69 aaPredicted RBP11.19□□□□□ -0.62
HDAC1-206ENST00000476391 MRPS21P82921 87 aaKnown RBP11.19□□□□□ -0.62
HDAC1-206ENST00000476391 LINC00322Q6ZN03 302 aaPredicted RBP11.19□□□□□ -0.62
HDAC1-206ENST00000476391 WDR86Q86TI4 376 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 GGNQ86UU5 652 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 DAZAP1Q96EP5 407 aaKnown RBP11.19□□□□□ -0.62
HDAC1-206ENST00000476391 ZNF414Q96IQ9 312 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 DEFB118Q96PH6 123 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 EPDR1Q9UM22 224 aa11.19□□□□□ -0.62
HDAC1-206ENST00000476391 TRAV5A0A0B4J249 113 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms