RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 TRAV41A0A0B4J266 112 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 SMAD7O15105 426 aaKnown RBP7.36□□□□□ -1.23
VPS52-216ENST00000471309 HMGB3O15347 200 aaKnown RBP7.36□□□□□ -1.23
VPS52-216ENST00000471309 CD5LO43866 347 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 BRI3O95415 125 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 FABP1P07148 127 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 OR5G3P0C626 314 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 SFTA3P0C7M3 94 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 BCL2P10415 239 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 GATA2P23769 480 aaPredicted RBP7.36□□□□□ -1.23
VPS52-216ENST00000471309 FCGR2BP31994 310 aaPredicted RBP7.36□□□□□ -1.23
VPS52-216ENST00000471309 TAGLN2P37802 199 aaKnown RBP7.36□□□□□ -1.23
VPS52-216ENST00000471309 PSMB3P49720 205 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 ZNF90Q03938 601 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 C10orf91Q5T1B1 145 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 SLC35E3Q7Z769 313 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 OR5T1Q8NG75 326 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 OR1L4Q8NGR5 311 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 VN1R17PQ8TDU5 208 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 GATAD1Q8WUU5 269 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 PFDN5Q99471 154 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 SEPSECSQ9HD40 501 aaKnown RBP7.36□□□□□ -1.23
VPS52-216ENST00000471309 MANBALQ9NQG1 85 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 GNG13Q9P2W3 67 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 VPREB3Q9UKI3 123 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 FUT9Q9Y231 359 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 CARHSP1Q9Y2V2 147 aaKnown RBP7.36□□□□□ -1.23
VPS52-216ENST00000471309 ABCA12Q86UK0 2595 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 MED13LQ71F56 2210 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 APCP25054 2843 aa7.36□□□□□ -1.23
VPS52-216ENST00000471309 CRYBG3Q68DQ2 2970 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 TRAV30A0A087WSZ9 112 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 LINC01548A6NM66 108 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 C9JQL5 133 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 G3V318 75 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 H3BUA1 57 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 PLXNB1O43157 2135 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 COX7A2P2O60397 106 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 SCGB2A1O75556 95 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 EIF3GO75821 320 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS52-216ENST00000471309 OR2J3O76001 311 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 NDUFB8O95169 186 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 CXorf1O96002 111 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 HSPB1P04792 205 aaKnown RBP7.35□□□□□ -1.23
VPS52-216ENST00000471309 ADCYAP1P18509 176 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 NPBWR1P48145 328 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 PPT1P50897 306 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 MFAP4P55083 255 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 PLP1P60201 277 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 ICAM4Q14773 271 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 HAGHQ16775 308 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 KHDC3LQ587J8 217 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 FAM78BQ5VT40 261 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 RBMS3Q6XE24 437 aaKnown RBP7.35□□□□□ -1.23
VPS52-216ENST00000471309 NECAP1Q8NC96 275 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 TMEM37Q8WXS4 190 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 TXN2Q99757 166 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 SEC11CQ9BY50 192 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 C21orf62Q9NYP8 219 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 FBXL7Q9UJT9 491 aa7.35□□□□□ -1.23
VPS52-216ENST00000471309 TACC2O95359 2948 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 ITPR2Q14571 2701 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 CELSR2Q9HCU4 2923 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 ELOA3CA0A087WX78 387 aaPredicted RBP7.34□□□□□ -1.23
VPS52-216ENST00000471309 F8W036 122 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 F8W735 103 aaPredicted RBP7.34□□□□□ -1.23
VPS52-216ENST00000471309 AP4M1O00189 453 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 GNG7O60262 68 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 NDUFS6O75380 124 aaKnown RBP7.34□□□□□ -1.23
VPS52-216ENST00000471309 IGKV1-17P01599 117 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 ARL14EPLP0DKL9 152 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 TAS2R45P59539 299 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 YPEL3P61236 119 aaPredicted RBP7.34□□□□□ -1.23
VPS52-216ENST00000471309 RHOGP84095 191 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 TIGITQ495A1 244 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 C9orf152Q5JTZ5 239 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 C10orf113Q5VZT2 155 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 SPATA31B1PQ5VZV4 182 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 SPNS3Q6ZMD2 512 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 RARRES2Q99969 163 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 GSX1Q9H4S2 264 aaPredicted RBP7.34□□□□□ -1.23
VPS52-216ENST00000471309 DNAJC4Q9NNZ3 241 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 TECRQ9NZ01 308 aaKnown RBP7.34□□□□□ -1.23
VPS52-216ENST00000471309 VAX2Q9UIW0 290 aa7.34□□□□□ -1.23
VPS52-216ENST00000471309 FAM223BA6NKX1 122 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 HOXA3O43365 443 aaPredicted RBP7.33□□□□□ -1.24
VPS52-216ENST00000471309 TOMM40O96008 361 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 SRP19P09132 144 aaKnown RBP7.33□□□□□ -1.24
VPS52-216ENST00000471309 C8orf88P0DMB2 117 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 PSG1P11464 419 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 GCHFRP30047 84 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 BLCAPP62952 87 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 MEF2BQ02080 365 aaPredicted RBP7.33□□□□□ -1.24
VPS52-216ENST00000471309 C15orf32Q32M92 178 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 Q56UQ5 140 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 PQLC2Q6ZP29 291 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 MIR17HGQ75NE6 70 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 FAM223AQ8IWN6 122 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 CCDC28AQ8IWP9 274 aa7.33□□□□□ -1.24
VPS52-216ENST00000471309 IQCF2Q8IXL9 164 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms