RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TMEM56-RWDD3S4R434 201 aa12.12□□□□□ -0.47
CCDC28B-204ENST00000469003 CEBPZOSA8MTT3 80 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 IGLC1P0CG04 106 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 RND2P52198 227 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 PRSS54Q6PEW0 395 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 CLVS1Q8IUQ0 354 aaPredicted RBP12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 SLC24A4Q8NFF2 622 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 OR51S1Q8NGJ8 323 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 DYNC2LI1Q8TCX1 351 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 RAB2BQ8WUD1 216 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 MFFQ9GZY8 342 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 CACFD1Q9UGQ2 172 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 U3KQE9 123 aa12.11□□□□□ -0.47
CCDC28B-204ENST00000469003 ANKRD20A5PA0PJZ0 165 aa12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 YPEL3P61236 119 aaPredicted RBP12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 RBMS2Q15434 407 aaKnown RBP12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 TRPT1Q86TN4 253 aaKnown RBP12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 C11orf45Q8TAV5 145 aa12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 DCANP1Q8TF63 244 aa12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 Q8WTZ3 238 aa12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 IL22RA2Q969J5 263 aa12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 BCL7BQ9BQE9 202 aa12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 PCLOQ9Y6V0 5065 aa12.1□□□□□ -0.47
CCDC28B-204ENST00000469003 GSTZ1O43708 216 aaPredicted RBP12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 HNRNPCP07910 306 aaKnown RBP eCLIP12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 SULT1A3P0DMM9 295 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 SULT1A4P0DMN0 295 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 OR10J1P30954 320 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 EIF2B2P49770 351 aaKnown RBP12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 TMBIM6P55061 237 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 NANOS2P60321 138 aaKnown RBP12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 TMEM41BQ5BJD5 291 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 ETFRF1Q6IPR1 90 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 NOXA1Q86UR1 476 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 TMEM170AQ8WVE7 144 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 SCGB3A2Q96PL1 93 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 SCP2D1Q9UJQ7 156 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 KCNIP3Q9Y2W7 256 aa12.09□□□□□ -0.47
CCDC28B-204ENST00000469003 HERC2O95714 4834 aa12.08□□□□□ -0.47
CCDC28B-204ENST00000469003 FRAS1Q86XX4 4008 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 HELTA6NFD8 242 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 ZNF688P0C7X2 276 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 SPP1P10451 314 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 NPY1RP25929 384 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 NMSQ5H8A3 153 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 MORN3Q6PF18 240 aaPredicted RBP12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 C16orf54Q6UWD8 224 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 GLMPQ8WWB7 406 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 FBXL17Q9UF56 701 aa12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 RSL24D1Q9UHA3 163 aaKnown RBP12.08□□□□□ -0.48
CCDC28B-204ENST00000469003 AGRNO00468 2067 aa12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 KNCNA6PVL3 124 aa12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 DEFB4AO15263 64 aa12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 NXPH3O95157 252 aa12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 IFNA4P05014 189 aa12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 GIG44P09565 113 aaPredicted RBP12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 AP2S1P53680 142 aaPredicted RBP12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 LGALS9CQ6DKI2 356 aa12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 NPIPB3Q92617 1050 aa12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 PRR13Q9NZ81 148 aa12.07□□□□□ -0.48
CCDC28B-204ENST00000469003 IL4P05112 153 aa12.06□□□□□ -0.48
CCDC28B-204ENST00000469003 CCR6P51684 374 aa12.06□□□□□ -0.48
CCDC28B-204ENST00000469003 DHRS2Q13268 280 aa12.06□□□□□ -0.48
CCDC28B-204ENST00000469003 USF2Q15853 346 aaPredicted RBP12.06□□□□□ -0.48
CCDC28B-204ENST00000469003 Q8NAQ8 132 aa12.06□□□□□ -0.48
CCDC28B-204ENST00000469003 SOSTQ9BQB4 213 aa12.06□□□□□ -0.48
CCDC28B-204ENST00000469003 HSPB7Q9UBY9 170 aa12.06□□□□□ -0.48
CCDC28B-204ENST00000469003 U3KQ87 197 aa12.06□□□□□ -0.48
CCDC28B-204ENST00000469003 A0A0B4J2A0 478 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 TOMM40O96008 361 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 IFNA10P01566 189 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 SUPT4H1P63272 117 aaKnown RBP12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 SMCO1Q147U7 214 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 ACTL10Q5JWF8 245 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 DTD1Q8TEA8 209 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 ACY3Q96HD9 319 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 SLIRPQ9GZT3 109 aaKnown RBP12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 MCUBQ9NWR8 336 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 SHPKQ9UHJ6 478 aa12.05□□□□□ -0.48
CCDC28B-204ENST00000469003 KMT2AQ03164 3969 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 NOL3O60936 208 aaKnown RBP12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 RD3LP0DJH9 198 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 MIFP14174 115 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 AKR1C4P17516 323 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 C4BPBP20851 252 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 TNFSF8P32971 234 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 PSMG4Q5JS54 123 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 LYZL2Q7Z4W2 148 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 LGI3Q8N145 548 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 RPP25LQ8N5L8 163 aaKnown RBP12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 C2CD4CQ8TF44 421 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 RAB40CQ96S21 281 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 HRH4Q9H3N8 390 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 RBKSQ9H477 322 aa12.04□□□□□ -0.48
CCDC28B-204ENST00000469003 IGHV4-28A0A0C4DH34 117 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 FABP12A6NFH5 140 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 ZNF705EA8MWA4 302 aaPredicted RBP12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 H3BMQ9 156 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 BUB3O43684 328 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 RBMY1A1P0DJD3 496 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms