RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SLC25A33Q9BSK2 321 aa9.52□□□□□ -0.89
NPHP4-204ENST00000460696 MRPL32Q9BYC8 188 aaKnown RBP9.52□□□□□ -0.89
NPHP4-204ENST00000460696 DIRC3C9JPN6 131 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 CORTO00230 105 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 LY6HO94772 140 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 TMEM170AQ8WVE7 144 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 IGLV2-14P01704 120 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 MT-ND6P03923 174 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 HNRNPA3P51991 378 aaKnown RBP9.51□□□□□ -0.89
NPHP4-204ENST00000460696 TMEM133Q9H2Q1 129 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 YTHDF2Q9Y5A9 579 aaKnown RBP9.51□□□□□ -0.89
NPHP4-204ENST00000460696 CHD3Q12873 2000 aaKnown RBP9.51□□□□□ -0.89
NPHP4-204ENST00000460696 CPAMD8Q8IZJ3 1885 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 A8MWL6 223 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 GNG5P63218 68 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 C17orf58Q2M2W7 97 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 TMEM177Q53S58 311 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 SP5Q6BEB4 398 aaPredicted RBP9.51□□□□□ -0.89
NPHP4-204ENST00000460696 FA2HQ7L5A8 372 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 SMIM15Q7Z3B0 74 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 KLHDC1Q8N7A1 406 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 PRSS3P2Q8NHM4 247 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 PGLYRP4Q96LB8 373 aa9.51□□□□□ -0.89
NPHP4-204ENST00000460696 CFAP46Q8IYW2 2715 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 IGHV3OR16-8A0A075B7F1 116 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 SLC25A48Q6ZT89 311 aaKnown RBP9.5□□□□□ -0.89
NPHP4-204ENST00000460696 GOLT1AQ6ZVE7 132 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 FAM169BQ8N8A8 192 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 CBLN4Q9NTU7 201 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 PPP1R14DQ9NXH3 145 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 M0R143 59 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 HLA-DQA1P01909 254 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 ARL3P36405 182 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 PAFAH1B2P68402 229 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 BET1LQ9NYM9 111 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 ISLRO14498 428 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 AMBPP02760 352 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 ADMP35318 185 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 GPX4P36969 197 aaPredicted RBP9.5□□□□□ -0.89
NPHP4-204ENST00000460696 FOXA3P55318 350 aaPredicted RBP9.5□□□□□ -0.89
NPHP4-204ENST00000460696 BPIFA4PQ86YQ2 179 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 VKORC1Q9BQB6 163 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 PARD6GQ9BYG4 376 aaPredicted RBP9.5□□□□□ -0.89
NPHP4-204ENST00000460696 ZNF257Q9Y2Q1 563 aa9.5□□□□□ -0.89
NPHP4-204ENST00000460696 PEX7O00628 323 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 IL4P05112 153 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 KHDC1LQ5JSQ8 128 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 FAM162BQ5T6X4 162 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 IGKV3-7A0A075B6H7 116 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 LOC105371242A0A075B767 164 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 WNT2P09544 360 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 VDAC2P45880 294 aaPredicted RBP9.49□□□□□ -0.89
NPHP4-204ENST00000460696 MSMPQ1L6U9 139 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 PRR31Q5SQ13 230 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 KIR3DL3Q8N743 410 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 MAPK1IP1LQ8NDC0 245 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 CD33P20138 364 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 LOXL3P58215 753 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 C2CD3Q4AC94 2353 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 Q6ZN92 141 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 PPP1R27Q86WC6 154 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 RNASEH2CQ8TDP1 164 aaKnown RBP9.49□□□□□ -0.89
NPHP4-204ENST00000460696 C1RLQ9NZP8 487 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 F8P00451 2351 aa9.49□□□□□ -0.89
NPHP4-204ENST00000460696 H0YJW9 148 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 IGHV3-23P01764 117 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 PFN1P07737 140 aaKnown RBP9.48□□□□□ -0.89
NPHP4-204ENST00000460696 CCDC144NLQ6NUI1 221 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 ATOH7Q8N100 152 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 C5orf30Q96GV9 206 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 GSX1Q9H4S2 264 aaPredicted RBP9.48□□□□□ -0.89
NPHP4-204ENST00000460696 DPM3Q9P2X0 92 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 EXPH5Q8NEV8 1989 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 MUC3AQ02505 3323 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 USP24Q9UPU5 2620 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 SERF1AO75920 110 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 TMEM256Q8N2U0 113 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 GBGT1Q8N5D6 347 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 SRSF12Q8WXF0 261 aaKnown RBP9.48□□□□□ -0.89
NPHP4-204ENST00000460696 IGHV2-5P01817 119 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 IGHV1-8P0DP01 117 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 GRNP28799 593 aaKnown RBP9.48□□□□□ -0.89
NPHP4-204ENST00000460696 C2orf83Q53S99 150 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 SEM1Q6ZVN7 128 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 ODF3L1Q8IXM7 274 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 OR4A5Q8NH83 315 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 WNT10AQ9GZT5 417 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 C11orf1Q9H5F2 150 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 IGLV3-9A0A075B6K5 115 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 IGHV3OR16-13A0A075B7E8 117 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 IGHV3-74A0A0B4J1X5 117 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 AMY1AP04745 511 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 CD99P14209 185 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 CFHR2P36980 270 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 IGFL3Q6UXB1 125 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 FAM19A2Q8N3H0 131 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 LINC00479Q96M42 142 aa9.48□□□□□ -0.89
NPHP4-204ENST00000460696 FREM2Q5SZK8 3169 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 J3KRW8 73 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 ORM1P02763 201 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 144.5 ms