RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 REG1AP05451 166 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 TNFRSF4P43489 277 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 AGFG2O95081 481 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 FOXE3Q13461 319 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 C9orf40Q8IXQ3 194 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 AP5S1Q9NUS5 200 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 TMEM213A2RRL7 107 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 KLK10O43240 276 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 OCIAD1Q9NX40 245 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 TIMM9Q9Y5J7 89 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 FANCMQ8IYD8 2048 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 K7EQS6 105 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 DEFB103AP81534 67 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 ZNF146Q15072 292 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 RFESDQ8TAC1 157 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 DENND4AQ7Z401 1863 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TRAV12-3A0A0B4J271 114 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 M0R3E3 92 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 FOXI1Q12951 378 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 FAM168AQ92567 244 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 PCNX1Q96RV3 2341 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 RRHO14718 337 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 OSTCQ9NRP0 149 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 KIAA1549LQ6ZVL6 1849 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 HIGD1CA8MV81 97 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 MIR17HGQ75NE6 70 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 CX3CL1P78423 397 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TET1Q8NFU7 2136 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 IGHV3-13P01766 116 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 RBPMS2Q6ZRY4 209 aaKnown RBP2.83□□□□□ -1.96
SYNE1-212ENST00000423061 VN1R4Q7Z5H5 301 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TTTY13Q9BZ97 58 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 HELZP42694 1942 aaKnown RBP2.83□□□□□ -1.96
SYNE1-212ENST00000423061 C10orf35Q96D05 121 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 AMMECR1Q9Y4X0 333 aaPredicted RBP2.83□□□□□ -1.96
SYNE1-212ENST00000423061 PLXNA2O75051 1894 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TCRBV4S1A1TA0A5B7 111 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 IGHV3-20A0A0C4DH32 117 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 A0A1W2PPI3 338 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 PRSS2P07478 247 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 PRNTQ86SH4 94 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 PLAUP00749 431 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 NABP1Q96AH0 204 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 IGKV1D-13A0A0B4J2D9 117 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 IGKV1-13P0DP09 117 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 WIPI1Q5MNZ9 446 aaPredicted RBP2.83□□□□□ -1.96
SYNE1-212ENST00000423061 EPDR1Q9UM22 224 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 FER1L5A0AVI2 2057 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TRAV25A0A0B4J276 109 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 NCR2O95944 276 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 OR9G4Q8NGQ1 327 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 FOXC1Q12948 553 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 IGKV1D-42A0A075B6H8 117 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 FAM53BQ14153 422 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 IGFBP7Q16270 282 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 VMA21Q3ZAQ7 101 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 RNF166Q96A37 237 aaPredicted RBP2.83□□□□□ -1.96
SYNE1-212ENST00000423061 OOSP1A8MZH6 123 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TRPT1Q86TN4 253 aaKnown RBP2.83□□□□□ -1.96
SYNE1-212ENST00000423061 ABHD12Q8N2K0 398 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 CDIP1Q9H305 208 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TRAV41A0A0B4J266 112 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 A0A1W2PNR3 127 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 DPM2O94777 84 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 ERHP84090 104 aaKnown RBP2.83□□□□□ -1.96
SYNE1-212ENST00000423061 PDPNQ86YL7 162 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 ZNF502Q8TBZ5 544 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TXNDC17Q9BRA2 123 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 SCRT2Q9NQ03 307 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 FNDC1Q4ZHG4 1894 aaPredicted RBP2.83□□□□□ -1.96
SYNE1-212ENST00000423061 TMEM14DPA8MWL7 114 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 KLRD1Q13241 179 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 PPP1R32Q7Z5V6 425 aa2.83□□□□□ -1.96
SYNE1-212ENST00000423061 C1orf53Q5VUE5 145 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 ZNF106Q9H2Y7 1883 aaKnown RBP2.82□□□□□ -1.96
SYNE1-212ENST00000423061 CEACAM18A8MTB9 384 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 FOXB1Q99853 325 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 TMEM167BQ9NRX6 74 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 TNFRSF1AP19438 455 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 Q6ZRM9 215 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 NXT2Q9NPJ8 142 aaKnown RBP2.82□□□□□ -1.96
SYNE1-212ENST00000423061 COL8A2P25067 703 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 POLEQ07864 2286 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 COL8A1P27658 744 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 ID3Q02535 119 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 NRGNQ92686 78 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 C8orf44Q96CB5 159 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 PLXNA4Q9HCM2 1894 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 ZIC3O60481 467 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 ZNF718Q3SXZ3 478 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 NUP35Q8NFH5 326 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 FGFBP3Q8TAT2 258 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 PLXND1Q9Y4D7 1925 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 C21orf140B9A014 251 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 TMEM196Q5HYL7 178 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 PTGDSP41222 190 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 HBBP68871 147 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 Q6ZQT7 251 aa2.82□□□□□ -1.96
SYNE1-212ENST00000423061 ORM2P19652 201 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms