RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 S100PP25815 95 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 ADIRFQ15847 76 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 BRD3OSQ6XYD6 125 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 ARPC1AQ92747 370 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 RPUSD4Q96CM3 377 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 SSX3Q99909 188 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 A0A0U1RQK1 487 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 HLA-DRB1P01911 266 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 PRR20EP86478 221 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 PRR20CP86479 221 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 PRR20DP86480 221 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 PRR20BP86481 221 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 PRR20AP86496 221 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 FABP9Q0Z7S8 132 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 MIC13Q5XKP0 118 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 SLC16A13Q7RTY0 426 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 SSMEM1Q8WWF3 244 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 OR5B12Q96R08 314 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 C12orf57Q99622 126 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 FOXC2Q99958 501 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 PYGO2Q9BRQ0 406 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 PITPNC1Q9UKF7 332 aa14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 F11RQ9Y624 299 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 ASH1LQ9NR48 2969 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-203ENST00000389856 TACC2O95359 2948 aa14.46□□□□□ -0.1
CCDC88C-203ENST00000389856 TEX22C9J3V5 150 aa14.45□□□□□ -0.1
CCDC88C-203ENST00000389856 FCN1O00602 326 aa14.45□□□□□ -0.1
CCDC88C-203ENST00000389856 S100A12P80511 92 aa14.45□□□□□ -0.1
CCDC88C-203ENST00000389856 ZNF343Q6P1L6 599 aa14.45□□□□□ -0.1
CCDC88C-203ENST00000389856 SPNS3Q6ZMD2 512 aa14.45□□□□□ -0.1
CCDC88C-203ENST00000389856 STPG3Q8N7X2 389 aa14.45□□□□□ -0.1
CCDC88C-203ENST00000389856 MOB4Q9Y3A3 225 aa14.45□□□□□ -0.1
CCDC88C-203ENST00000389856 TGIF2-C20orf24A0A0A6YYL0 155 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 H7BYZ3 331 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 PPP1R2P9O14990 202 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 EIF3GO75821 320 aaKnown RBP eCLIP14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 FAM120AOSQ5T036 256 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 PVRIGQ6DKI7 326 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 HIST2H2BCQ6DN03 193 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 SLC45A2Q9UMX9 530 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 URGCP-MRPS24S4R325 110 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 ABCA12Q86UK0 2595 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 CENPEQ02224 2701 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 M0QZK8 103 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 DEFA4P12838 97 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 SRP14P37108 136 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 CX3CL1P78423 397 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 KRTAP1-3Q8IUG1 177 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 Q8N9W7 124 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 GATAD1Q8WUU5 269 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 RBM14Q96PK6 669 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 RNF2Q99496 336 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 CRYBG3Q68DQ2 2970 aa14.44□□□□□ -0.1
CCDC88C-203ENST00000389856 PFN1P07737 140 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 ARL14EPLP0DKL9 152 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 AREGP15514 252 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 HOXA5P20719 270 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 GCHFRP30047 84 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 GCSAMLQ5JQS6 135 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 KLF17Q5JT82 389 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 C16orf82Q7Z2V1 217 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 TMEM68Q96MH6 324 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 IMMP2LQ96T52 175 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 SLC25A33Q9BSK2 321 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 SRD5A3Q9H8P0 318 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 TMEM167BQ9NRX6 74 aa14.43□□□□□ -0.1
CCDC88C-203ENST00000389856 ELOA3CA0A087WX78 387 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 NPIPB5A8MRT5 1133 aa14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 REG1AP05451 166 aa14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 SSBP2P81877 361 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 GAMTQ14353 236 aa14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 CST9LP1Q5W188 147 aa14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 MAPK1IP1LQ8NDC0 245 aa14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 MISP3Q96FF7 219 aa14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 POLQO75417 2590 aa14.42□□□□□ -0.1
CCDC88C-203ENST00000389856 LINC00869P0C866 280 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 UHRF2Q96PU4 802 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 THYN1Q9P016 225 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 FUT9Q9Y231 359 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 LY96Q9Y6Y9 160 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 HECTD1Q9ULT8 2610 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 FBN2P35556 2912 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 CR1P17927 2039 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 CRYGCP07315 174 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 CDX1P47902 265 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 TAS2R45P59539 299 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 KCNIP4Q6PIL6 250 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 OR51G1Q8NGK1 321 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 C11orf52Q96A22 123 aa14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 TECRQ9NZ01 308 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-203ENST00000389856 AVPP01185 164 aa14.4□□□□□ -0.1
CCDC88C-203ENST00000389856 GALR1P47211 349 aa14.4□□□□□ -0.1
CCDC88C-203ENST00000389856 PQLC2Q6ZP29 291 aa14.4□□□□□ -0.1
CCDC88C-203ENST00000389856 ACY3Q96HD9 319 aa14.4□□□□□ -0.1
CCDC88C-203ENST00000389856 MRPL32Q9BYC8 188 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-203ENST00000389856 WNT10AQ9GZT5 417 aa14.4□□□□□ -0.1
CCDC88C-203ENST00000389856 IGHV7-81A0A0B4J1V7 117 aa14.39□□□□□ -0.11
CCDC88C-203ENST00000389856 HIST1H1BP16401 226 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-203ENST00000389856 NPPCP23582 126 aa14.39□□□□□ -0.11
CCDC88C-203ENST00000389856 SELENOTP62341 195 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms