RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 NTF4P34130 210 aa13.18□□□□□ -0.3
COL17A1-202ENST00000369733 A0A1B0GUS0 222 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 ASIPP42127 132 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 FAM27E3Q08E93 113 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 FAM159AQ6UWV7 190 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 LOXL4Q96JB6 756 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 IFI27L1Q96BM0 104 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 C20orf144Q9BQM9 153 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 NAA38Q9BRA0 125 aaKnown RBP13.17□□□□□ -0.3
COL17A1-202ENST00000369733 MRPL27Q9P0M9 148 aaKnown RBP13.17□□□□□ -0.3
COL17A1-202ENST00000369733 FTH1P19P0C7X4 201 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 ASCL4Q6XD76 172 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 NUP35Q8NFH5 326 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 FBXL7Q9UJT9 491 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 TRAV3A0A0B4J244 114 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 TSPAN13O95857 204 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 IGKV1D-33P01593 117 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 IGKV1-33P01594 117 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 CDKN1AP38936 164 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 PAPPA-AS1Q5QFB9 102 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 VCX2Q9H322 139 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 AHCTF1Q8WYP5 2266 aa13.17□□□□□ -0.3
COL17A1-202ENST00000369733 IGHV3OR16-8A0A075B7F1 116 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 CSRP2Q16527 193 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 PPP1R17O96001 155 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 SFTPCP11686 197 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 DMRTC2Q8IXT2 367 aaPredicted RBP13.16□□□□□ -0.3
COL17A1-202ENST00000369733 SVILO95425 2214 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 VWA8A3KMH1 1905 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 WDR81Q562E7 1941 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 A0A087X0K7 114 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 C15orf62A8K5M9 175 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 LHFPL4Q7Z7J7 247 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 FAM169BQ8N8A8 192 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 RNF115Q9Y4L5 304 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 SFTA2Q6UW10 78 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 C9orf106Q8NAJ2 232 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 OR9G4Q8NGQ1 327 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 C1orf147Q96MC9 270 aaPredicted RBP13.16□□□□□ -0.3
COL17A1-202ENST00000369733 DPM3Q9P2X0 92 aa13.16□□□□□ -0.3
COL17A1-202ENST00000369733 FABP5P3A8MUU1 101 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 IGKCP01834 107 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 ZNF585BQ52M93 769 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 COPS9Q8WXC6 57 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 ERVK11-1P61568 191 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 GEMIN7Q9H840 131 aaKnown RBP13.15□□□□□ -0.3
COL17A1-202ENST00000369733 SDK2Q58EX2 2172 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 ARHGEF17Q96PE2 2063 aaPredicted RBP13.15□□□□□ -0.3
COL17A1-202ENST00000369733 LINC00473A8K010 186 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 Q6P435 159 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 C20orf204Q6ZNR8 217 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 RNF125Q96EQ8 232 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 NXT2Q9NPJ8 142 aaKnown RBP13.15□□□□□ -0.3
COL17A1-202ENST00000369733 A0A0G2JLM5 398 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 LILRA1O75019 489 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 C8orf46Q8TAG6 207 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 PRR7Q8TB68 274 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 ZNF479Q96JC4 524 aa13.15□□□□□ -0.3
COL17A1-202ENST00000369733 B9A039 149 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 PVRIGQ6DKI7 326 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 PRR19A6NJB7 356 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 SYS1-DBNDD2H3BUS1 97 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 Q0VG73 95 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 ARPC1AQ92747 370 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 VOPP1Q96AW1 172 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 COX11Q9Y6N1 276 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 PSG1P11464 419 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 MEIG1Q5JSS6 88 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 SLC25A48Q6ZT89 311 aaKnown RBP13.14□□□□□ -0.31
COL17A1-202ENST00000369733 SELENOKQ9Y6D0 94 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 CACNA1DQ01668 2161 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 PPBPP02775 128 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 GUSBP1Q15486 140 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 TPTE2P1Q5T6R2 138 aa13.14□□□□□ -0.31
COL17A1-202ENST00000369733 UBE2L6O14933 153 aa13.13□□□□□ -0.31
COL17A1-202ENST00000369733 FAM106AQ4KMX7 169 aa13.13□□□□□ -0.31
COL17A1-202ENST00000369733 FOXL2NBQ6ZUU3 175 aa13.13□□□□□ -0.31
COL17A1-202ENST00000369733 KLF2Q9Y5W3 355 aaPredicted RBP13.13□□□□□ -0.31
COL17A1-202ENST00000369733 PTPRZ1P23471 2315 aaPredicted RBP13.13□□□□□ -0.31
COL17A1-202ENST00000369733 C10orf126Q8N4M7 172 aa13.13□□□□□ -0.31
COL17A1-202ENST00000369733 HOXA3O43365 443 aaPredicted RBP13.13□□□□□ -0.31
COL17A1-202ENST00000369733 EVI2AP22794 236 aa13.13□□□□□ -0.31
COL17A1-202ENST00000369733 MRPS16Q9Y3D3 137 aaKnown RBP13.13□□□□□ -0.31
COL17A1-202ENST00000369733 GFRA3O60609 400 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 LTBRP36941 435 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 VKORC1Q9BQB6 163 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 PAX9P55771 341 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 LINC00205P59089 165 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 SNRNP200O75643 2136 aaKnown RBP13.12□□□□□ -0.31
COL17A1-202ENST00000369733 MGAMO43451 1857 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 SRSF1Q07955 248 aaKnown RBP eCLIP13.12□□□□□ -0.31
COL17A1-202ENST00000369733 KLRB1Q12918 225 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 ZNF726P1Q15940 193 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 ASCL2Q99929 193 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 IGKV1-6A0A0C4DH72 117 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 C17orf100A8MU93 164 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 PRB4P10163 310 aaPredicted RBP13.12□□□□□ -0.31
COL17A1-202ENST00000369733 PPP1R27Q86WC6 154 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 LIME1Q9H400 295 aa13.12□□□□□ -0.31
COL17A1-202ENST00000369733 APOBEC3AP31941 199 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 176.4 ms