RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OR2T35Q8NGX2 323 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 SMIM12Q96EX1 92 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 PRR25Q96S07 402 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 MRPL20Q9BYC9 149 aaKnown RBP3.33□□□□□ -1.88
USH2A-202ENST00000366942 PRO3102Q9H379 93 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 TMEM30AQ9NV96 361 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 SHPKQ9UHJ6 478 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 IGHV1-3A0A0C4DH29 117 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 A0A1B0GW15 77 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 AMY1AP04745 511 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 KIR3DS1Q14943 382 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 IGFL2Q6UWQ7 119 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 DLEU7Q6UYE1 221 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 NPIPB3Q92617 1050 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 VAMP8Q9BV40 100 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 RBFOX1Q9NWB1 397 aaKnown RBP3.33□□□□□ -1.88
USH2A-202ENST00000366942 DOCK1Q14185 1865 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 THADAQ6YHU6 1953 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 HLA-DQB1P01920 261 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 PAX9P55771 341 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 COX20Q5RI15 118 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 C6orf201Q7Z4U5 140 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 SNHG12Q9BXW3 62 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 F11RQ9Y624 299 aaKnown RBP3.33□□□□□ -1.88
USH2A-202ENST00000366942 PEAK1Q9H792 1746 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 MYH1P12882 1939 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 IGKV2D-26A0A0A0MRZ7 120 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 OIP5O43482 229 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 IGHV3-53P01767 116 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 IGHV2-70P01814 119 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 HLA-DRB1P01911 266 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 CD55P08174 381 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 AZU1P20160 251 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 PSMB6P28072 239 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 RPL12P30050 165 aaKnown RBP3.33□□□□□ -1.88
USH2A-202ENST00000366942 CCKARP32238 428 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 CLDN12P56749 244 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 EGR4Q05215 589 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 TMEM243Q9BU79 118 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 FBLN5Q9UBX5 448 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 SNRPBP14678 240 aaKnown RBP3.33□□□□□ -1.88
USH2A-202ENST00000366942 MUC7Q8TAX7 377 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 IFI27L2Q9H2X8 130 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 IL20Q9NYY1 176 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 ANKRD36CQ5JPF3 1778 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 TRPM7Q96QT4 1865 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 F8P00451 2351 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 TRAV24A0A0B4J272 114 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 B4DEV8 164 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 BUB1B-PAK6H3BSN5 160 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 PEX7O00628 323 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 PKD1L3Q7Z443 1732 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 TMEM191AQ9H0A3 160 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 KCNE3Q9Y6H6 103 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 DOCK7Q96N67 2140 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 IFITM5A6NNB3 132 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 G3V2L1 256 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 MBPP02686 304 aaPredicted RBP3.32□□□□□ -1.88
USH2A-202ENST00000366942 IGHV4-31P0DP07 118 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 JUNBP17275 347 aaPredicted RBP3.32□□□□□ -1.88
USH2A-202ENST00000366942 Q8N976 141 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 TMEM229BQ8NBD8 167 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 OR4D5Q8NGN0 318 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 YIPF5Q969M3 257 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 OVOL2Q9BRP0 275 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 PLSCR2Q9NRY7 297 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 HSPB8Q9UJY1 196 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 KLF12Q9Y4X4 402 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 STRCQ7RTU9 1775 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 ATG2BQ96BY7 2078 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 MAP1LC3B2A6NCE7 125 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 H3BP45 60 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 ARPC5O15511 151 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 APOHP02749 345 aaPredicted RBP3.32□□□□□ -1.88
USH2A-202ENST00000366942 RNF224P0DH78 156 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 FOXA1P55317 472 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 SRSF2Q01130 221 aaKnown RBP3.32□□□□□ -1.88
USH2A-202ENST00000366942 C1orf194Q5T5A4 169 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 C4orf3Q8WVX3 66 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 HIST1H2BAQ96A08 127 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 RSPO3Q9BXY4 272 aaPredicted RBP3.32□□□□□ -1.88
USH2A-202ENST00000366942 MAP1LC3BQ9GZQ8 125 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 CCL28Q9NRJ3 127 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 SS18L2Q9UHA2 77 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 ANKHD1Q8IWZ3 2542 aaKnown RBP3.32□□□□□ -1.88
USH2A-202ENST00000366942 A0A0G2JK05 382 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 LYRM9A8MSI8 78 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 CTDSPLO15194 276 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 RPS11P62280 158 aaKnown RBP eCLIP3.32□□□□□ -1.88
USH2A-202ENST00000366942 SRSF1Q07955 248 aaKnown RBP eCLIP3.32□□□□□ -1.88
USH2A-202ENST00000366942 LINC00303Q3SY05 128 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 GGACTQ9BVM4 153 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 TRBV20OR9-2A0A075B6H5 130 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 FAM231BA6NCW3 169 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 VCYO14598 125 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 RPS27P42677 84 aaKnown RBP3.32□□□□□ -1.88
USH2A-202ENST00000366942 FOXI2Q6ZQN5 318 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 ZCCHC24Q8N2G6 241 aaKnown RBP3.32□□□□□ -1.88
USH2A-202ENST00000366942 Q8TCH9 128 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 TIMM17AQ99595 171 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms