RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CT45A1Q5HYN5 189 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 TMEM251Q8N6I4 163 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 OR10W1Q8NGF6 305 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 OR1N2Q8NGR9 330 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 CT45A3Q8NHU0 189 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 FXYD5Q96DB9 178 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 FAM173AQ9BQD7 235 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 PAXXQ9BUH6 204 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 MLST8Q9BVC4 326 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 TTTY12Q9BZ98 90 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 CXXC4Q9H2H0 198 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 RPP21Q9H633 154 aaKnown RBP5.5□□□□□ -1.53
VPS39-202ENST00000348544 FZR1Q9UM11 496 aa5.5□□□□□ -1.53
VPS39-202ENST00000348544 TIMM8BQ9Y5J9 83 aaPredicted RBP5.5□□□□□ -1.53
VPS39-202ENST00000348544 SRRM4A7MD48 611 aaKnown RBP5.49□□□□□ -1.53
VPS39-202ENST00000348544 OVOL3O00110 214 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 APOA2P02652 100 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 OR5AL1P0C617 328 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 CD69Q07108 199 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 RAB30Q15771 203 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 C2orf83Q53S99 150 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 Q71RC1 249 aaPredicted RBP5.49□□□□□ -1.53
VPS39-202ENST00000348544 ITLN1Q8WWA0 313 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 NEU4Q8WWR8 484 aaPredicted RBP5.49□□□□□ -1.53
VPS39-202ENST00000348544 HILPDAQ9Y5L2 63 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 DMDP11532 3685 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 TEX50A0A1B0GTY4 177 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 C19orf71A6NCJ1 209 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 H3BRM9 83 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 MOSP00540 346 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 PLAUP00749 431 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 CSN3P07498 182 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 PPIAL4GP0DN37 164 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 RBPJQ06330 500 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 POU2AF1Q16633 256 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 CR1LQ2VPA4 569 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 GTF2H5Q6ZYL4 71 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 BHLHA15Q7RTS1 189 aaPredicted RBP5.49□□□□□ -1.53
VPS39-202ENST00000348544 UBALD2Q8IYN6 164 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 ZNF714Q96N38 554 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 NDFIP1Q9BT67 221 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 RABAC1Q9UI14 185 aa5.49□□□□□ -1.53
VPS39-202ENST00000348544 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.48□□□□□ -1.53
VPS39-202ENST00000348544 UPK2O00526 184 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 MGST3O14880 152 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 APOHP02749 345 aaPredicted RBP5.48□□□□□ -1.53
VPS39-202ENST00000348544 IGKV1-16P04430 117 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 MRPL49Q13405 166 aaKnown RBP5.48□□□□□ -1.53
VPS39-202ENST00000348544 KIR3DS1Q14943 382 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 TMEM177Q53S58 311 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 HES3Q5TGS1 186 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 ZNRF1Q8ND25 227 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 OR4A5Q8NH83 315 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 TMEM186Q96B77 213 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 ZNF747Q9BV97 191 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 HSPB8Q9UJY1 196 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 PRNDQ9UKY0 176 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 EPDR1Q9UM22 224 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 ZNF257Q9Y2Q1 563 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 KLF12Q9Y4X4 402 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 IGHV3OR15-7A0A075B7D8 119 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 A0A0G2JLM5 398 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 COX7A2P2O60397 106 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 LYZL6O75951 148 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 AGFG2O95081 481 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 IGHV3-48P01763 117 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 FAM87AP0C7U9 286 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 C17orf58Q2M2W7 97 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 C10orf113Q5VZT2 155 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 TMEM116Q8NCL8 245 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 NPFFR1Q9GZQ6 430 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 CALYQ9NYX4 217 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 B4GALT7Q9UBV7 327 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 KNTC1P50748 2209 aa5.48□□□□□ -1.53
VPS39-202ENST00000348544 IGKV1D-37A0A075B6S9 117 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 A8MWL6 223 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 E7EUB6 86 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 SLC25A5P05141 298 aaKnown RBP5.47□□□□□ -1.53
VPS39-202ENST00000348544 CGB3P0DN86 165 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 CGB7P0DN87 165 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 IGHV1-2P23083 117 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 APOBEC3AP31941 199 aaPredicted RBP5.47□□□□□ -1.53
VPS39-202ENST00000348544 TCTAP57738 103 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 GUSBP1Q15486 140 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 CT83Q5H943 113 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 RBPMS2Q6ZRY4 209 aaKnown RBP5.47□□□□□ -1.53
VPS39-202ENST00000348544 OR1L8Q8NGR8 309 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 OR2K2Q8NGT1 345 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 OR10AG1Q8NH19 301 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 GPR82Q96P67 336 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 MRPL36Q9P0J6 103 aaKnown RBP5.47□□□□□ -1.53
VPS39-202ENST00000348544 ZNRD1Q9P1U0 126 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 SOX21Q9Y651 276 aaPredicted RBP5.47□□□□□ -1.53
VPS39-202ENST00000348544 PCNX2A6NKB5 2137 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 A0A096LNJ9 63 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 NTN3O00634 580 aaPredicted RBP5.47□□□□□ -1.53
VPS39-202ENST00000348544 TIMM8AO60220 97 aaPredicted RBP5.47□□□□□ -1.53
VPS39-202ENST00000348544 GNG7O60262 68 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 P01737 135 aa5.47□□□□□ -1.53
VPS39-202ENST00000348544 FAM106CPP0CH98 169 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms