RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 NEU1Q99519 415 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 H0YIZ8 118 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 RAMP3O60896 148 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 HLA-DRB4P13762 266 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 ZP1P60852 638 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 SPINK14Q6IE38 97 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 IFI27L2Q9H2X8 130 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 DTX4Q9Y2E6 619 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 HLA-DRB4X5D2U9 266 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 H3BP45 60 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 FTH1P19P0C7X4 201 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 LHX2P50458 406 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 EFNB3Q15768 340 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 Q6ZSR3 168 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 FER1L6-AS1Q8NA97 138 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 IGKV1D-42A0A075B6H8 117 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 PI3P19957 117 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 PEBP1P30086 187 aaKnown RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 FAAP20Q6NZ36 180 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 HSPB9Q9BQS6 159 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 RTBDNQ9BSG5 229 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 C21orf62Q9NYP8 219 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 TNFRSF18Q9Y5U5 241 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 C17orf100A8MU93 164 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 UMODP07911 640 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 C10orf126Q8N4M7 172 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 WNT5BQ9H1J7 359 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 TRBV20OR9-2A0A075B6H5 130 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 CENPWQ5EE01 88 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 WDR83OSQ9Y284 106 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 A0A0J9YW62 118 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 VCYO14598 125 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 LOXL3P58215 753 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 CD300CQ08708 224 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 YPEL3P61236 119 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 PIGYQ3MUY2 71 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 AMN1Q8IY45 258 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 A0A0A6YYD4 124 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 SRP19P09132 144 aaKnown RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 DUTP33316 252 aaKnown RBP3.35□□□□□ -1.87
USH2A-201ENST00000307340 UNC119Q13432 240 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 PLAC9Q5JTB6 97 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 OTPQ5XKR4 325 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 C9JQL5 133 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 C9orf152Q5JTZ5 239 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 A0A1B0GUS0 222 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 PRSS47A8MTI9 375 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 CXCL1P09341 107 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 CCDC140Q96MF4 163 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 FAM103A1Q9BTL3 118 aaKnown RBP3.35□□□□□ -1.87
USH2A-201ENST00000307340 PRDM6Q9NQX0 595 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 DAZ1Q9NQZ3 744 aaKnown RBP3.35□□□□□ -1.87
USH2A-201ENST00000307340 E9PQ18 207 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 CT62P0C5K7 136 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 ATXN8Q156A1 80 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 PIK3CD-AS1Q5SR53 167 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 ZNF818PQ6ZRF7 136 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BKO60814 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BJP06899 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BOP23527 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 CRYBB3P26998 211 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BBP33778 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BDP58876 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BCP62807 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST2H2BEQ16778 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BHQ93079 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BNQ99877 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H2BMQ99879 126 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 CADP27708 2225 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 A0A1B0GWJ7 208 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 A8MWP6 167 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 PCOLCEQ15113 449 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 ARRDC1-AS1Q9H2J1 176 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 FBXL15Q9H469 300 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HAX1O00165 279 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 ANKRD34AQ69YU3 496 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 DEFB127Q9H1M4 99 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 TMEM89A2RUT3 159 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 PRR32B1ATL7 298 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 DLEU1O43261 78 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 MALP21145 153 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 ZFAND6Q6FIF0 208 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 TMEM133Q9H2Q1 129 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 GSN-AS1Q9NRJ2 163 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 SLC22A18ASQ8N1D0 253 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 SSBP4Q9BWG4 385 aaPredicted RBP3.35□□□□□ -1.87
USH2A-201ENST00000307340 NOTCH3Q9UM47 2321 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 A0A1W2PPI3 338 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 ROS1P08922 2347 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 EIF3GO75821 320 aaKnown RBP eCLIP3.35□□□□□ -1.87
USH2A-201ENST00000307340 IGKV1D-16P01601 117 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 HERV-K104P63124 156 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 TSPO2Q5TGU0 170 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 A0A1B0GWB2 263 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 PGPA6NDG6 321 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 RNF125Q96EQ8 232 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 PYGO2Q9BRQ0 406 aa3.35□□□□□ -1.87
USH2A-201ENST00000307340 RTN4RQ9BZR6 473 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms