RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CA1P00915 261 aaPredicted RBP12.5□□□□□ -0.41
CLN3-216ENST00000565316 CD74P04233 296 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 UCP1P25874 307 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 CRYBB3P26998 211 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 DEFB131AP59861 70 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 RNASE12Q5GAN4 147 aaKnown RBP12.5□□□□□ -0.41
CLN3-216ENST00000565316 OR4D10Q8NGI6 311 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 OR4X1Q8NH49 305 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 ZFAND1Q8TCF1 268 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 AP3S1Q92572 193 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 A0A0G2JRQ6 117 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 ZNF182P17025 639 aaPredicted RBP12.49□□□□□ -0.41
CLN3-216ENST00000565316 NPPCP23582 126 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 TMEM187Q14656 261 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 CTF1Q16619 201 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 SP6Q3SY56 376 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 LEMD1Q68G75 181 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 Q6ZRM9 215 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 CCDC71LQ8N9Z2 235 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 TMEM229BQ8NBD8 167 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 OR13C8Q8NGS7 320 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 PDCD10Q9BUL8 212 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 COPZ2Q9P299 210 aa12.49□□□□□ -0.41
CLN3-216ENST00000565316 A0A1W2PS18 150 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 K7EQG2 157 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 GABARAPO95166 117 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 IGKV1-17P01599 117 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 GIG44P09565 113 aaPredicted RBP12.48□□□□□ -0.41
CLN3-216ENST00000565316 HOXA1P49639 335 aaPredicted RBP12.48□□□□□ -0.41
CLN3-216ENST00000565316 PPP5CP53041 499 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 RPL11P62913 178 aaKnown RBP12.48□□□□□ -0.41
CLN3-216ENST00000565316 RBMS2Q15434 407 aaKnown RBP12.48□□□□□ -0.41
CLN3-216ENST00000565316 MLANAQ16655 118 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 TRIM16LQ309B1 348 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 C15orf40Q8WUR7 153 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 RRNAD1Q96FB5 475 aaKnown RBP12.48□□□□□ -0.41
CLN3-216ENST00000565316 GRAMD2BQ96HH9 432 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 METTL26Q96S19 204 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 NAA50Q9GZZ1 169 aaKnown RBP12.48□□□□□ -0.41
CLN3-216ENST00000565316 ENY2Q9NPA8 101 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 EXTL2Q9UBQ6 330 aa12.48□□□□□ -0.41
CLN3-216ENST00000565316 HERC2O95714 4834 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 CDS2O95674 445 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 IFNA4P05014 189 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 SPCS3P61009 180 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 FAM219AQ8IW50 185 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 OR52E5Q8NH55 327 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 TMEM222Q9H0R3 208 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 FBXL17Q9UF56 701 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 RABAC1Q9UI14 185 aa12.47□□□□□ -0.41
CLN3-216ENST00000565316 DEDDO75618 318 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 OPRK1P41145 380 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 P2RY1P47900 373 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 TCTAP57738 103 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 TAS2R19P59542 299 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 TRPT1Q86TN4 253 aaKnown RBP12.46□□□□□ -0.41
CLN3-216ENST00000565316 STHQ8IWL8 128 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 Q8NAQ8 132 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 MARCH1Q8TCQ1 289 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 U3KQE9 123 aa12.46□□□□□ -0.41
CLN3-216ENST00000565316 TRAV30A0A087WSZ9 112 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 DEFB4AO15263 64 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 SCGB2A1O75556 95 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 RAB3DO95716 219 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 HTR2BP41595 481 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 SSBP1Q04837 148 aaKnown RBP12.45□□□□□ -0.42
CLN3-216ENST00000565316 TIGITQ495A1 244 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 SCGB2B2Q4G0G5 96 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 TMEM41BQ5BJD5 291 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 STEAP1BQ6NZ63 245 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 LHFPL5Q8TAF8 219 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 C2CD4CQ8TF44 421 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 DCANP1Q8TF63 244 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 GLYATL2Q8WU03 294 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 TMEM230Q96A57 120 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 RTBDNQ9BSG5 229 aaPredicted RBP12.45□□□□□ -0.42
CLN3-216ENST00000565316 MIXL1Q9H2W2 232 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 HRH4Q9H3N8 390 aa12.45□□□□□ -0.42
CLN3-216ENST00000565316 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.45□□□□□ -0.42
CLN3-216ENST00000565316 GABARAPH6UMI1 98 aa12.44□□□□□ -0.42
CLN3-216ENST00000565316 SPP1P10451 314 aa12.44□□□□□ -0.42
CLN3-216ENST00000565316 MORN3Q6PF18 240 aaPredicted RBP12.44□□□□□ -0.42
CLN3-216ENST00000565316 STXBP6Q8NFX7 210 aa12.44□□□□□ -0.42
CLN3-216ENST00000565316 RNASE11Q8TAA1 199 aaKnown RBP12.44□□□□□ -0.42
CLN3-216ENST00000565316 TEX13DA0A0J9YY54 714 aaPredicted RBP12.43□□□□□ -0.42
CLN3-216ENST00000565316 RPS10-NUDT3A0A1W2PQS6 291 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 ZNF705EA8MWA4 302 aaPredicted RBP12.43□□□□□ -0.42
CLN3-216ENST00000565316 OR5AC1P0C628 307 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 IGLC1P0CG04 106 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 RBMY1A1P0DJD3 496 aaKnown RBP12.43□□□□□ -0.42
CLN3-216ENST00000565316 RBMY1CP0DJD4 496 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 SMIM18P0DKX4 95 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 MEF2DQ14814 521 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 RBMY1FQ15415 496 aaKnown RBP12.43□□□□□ -0.42
CLN3-216ENST00000565316 SURF2Q15527 256 aaPredicted RBP12.43□□□□□ -0.42
CLN3-216ENST00000565316 C2orf83Q53S99 150 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 PRSS54Q6PEW0 395 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 SELENOHQ8IZQ5 122 aaKnown RBP12.43□□□□□ -0.42
CLN3-216ENST00000565316 OR1S2Q8NGQ3 325 aa12.43□□□□□ -0.42
CLN3-216ENST00000565316 RBPMSQ93062 196 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms