RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PVRIGQ6DKI7 326 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 STXBP6Q8NFX7 210 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 TP53RKQ96S44 253 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 FNDC4Q9H6D8 234 aaPredicted RBP12.25□□□□□ -0.45
CLN3-211ENST00000564091 TMEM231Q9H6L2 316 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 DYNC1H1Q14204 4646 aaKnown RBP12.24□□□□□ -0.45
CLN3-211ENST00000564091 ZNF688P0C7X2 276 aa12.24□□□□□ -0.45
CLN3-211ENST00000564091 ELK1P19419 428 aa12.24□□□□□ -0.45
CLN3-211ENST00000564091 HLA-DMBP28068 263 aa12.24□□□□□ -0.45
CLN3-211ENST00000564091 AKR1C2P52895 323 aa12.24□□□□□ -0.45
CLN3-211ENST00000564091 PIGPP57054 158 aa12.24□□□□□ -0.45
CLN3-211ENST00000564091 RND3P61587 244 aa12.24□□□□□ -0.45
CLN3-211ENST00000564091 NCS1P62166 190 aa12.24□□□□□ -0.45
CLN3-211ENST00000564091 TRPT1Q86TN4 253 aaKnown RBP12.24□□□□□ -0.45
CLN3-211ENST00000564091 METTL26Q96S19 204 aa12.24□□□□□ -0.45
CLN3-211ENST00000564091 A0A1W2PS18 150 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 INS-IGF2F8WCM5 200 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 K7EQG2 157 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 HPGDSO60760 199 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 CLN5O75503 358 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 C4BPBP20851 252 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 OPRK1P41145 380 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 HOXA1P49639 335 aaPredicted RBP12.23□□□□□ -0.45
CLN3-211ENST00000564091 SP6Q3SY56 376 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 TMEM230Q96A57 120 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 PDCD10Q9BUL8 212 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 HRH4Q9H3N8 390 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 CLEC5AQ9NY25 188 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 KLK11Q9UBX7 282 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 DNAH11Q96DT5 4516 aa12.23□□□□□ -0.45
CLN3-211ENST00000564091 A0A0G2JRQ6 117 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 C3orf85A0A1B0GTC6 90 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 C11orf94C9JXX5 98 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 CORTO00230 105 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 CRYBB3P26998 211 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 P2RY1P47900 373 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 SUB1P53999 127 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLN3-211ENST00000564091 VBP1P61758 197 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 TRIM16LQ309B1 348 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 TIGITQ495A1 244 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 ACTL10Q5JWF8 245 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 Q6ZTC4 211 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 LHFPL1Q86WI0 220 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 OR4X1Q8NH49 305 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 ZNF486Q96H40 463 aaPredicted RBP12.22□□□□□ -0.45
CLN3-211ENST00000564091 ENY2Q9NPA8 101 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 X6R8D5 127 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 PKHD1P08F94 4074 aa12.22□□□□□ -0.45
CLN3-211ENST00000564091 ELOA3CA0A087WX78 387 aaPredicted RBP12.21□□□□□ -0.45
CLN3-211ENST00000564091 ZNF705EA8MWA4 302 aaPredicted RBP12.21□□□□□ -0.45
CLN3-211ENST00000564091 IGKV1-17P01599 117 aa12.21□□□□□ -0.45
CLN3-211ENST00000564091 CD3DP04234 171 aa12.21□□□□□ -0.45
CLN3-211ENST00000564091 MORN3Q6PF18 240 aaPredicted RBP12.21□□□□□ -0.45
CLN3-211ENST00000564091 DCANP1Q8TF63 244 aa12.21□□□□□ -0.45
CLN3-211ENST00000564091 GRAMD2BQ96HH9 432 aa12.21□□□□□ -0.45
CLN3-211ENST00000564091 VCX3AQ9NNX9 186 aa12.21□□□□□ -0.45
CLN3-211ENST00000564091 A0A087WXM4 84 aa12.2□□□□□ -0.46
CLN3-211ENST00000564091 ATG12O94817 140 aa12.2□□□□□ -0.46
CLN3-211ENST00000564091 SPP1P10451 314 aa12.2□□□□□ -0.46
CLN3-211ENST00000564091 MIFP14174 115 aa12.2□□□□□ -0.46
CLN3-211ENST00000564091 RPL5P46777 297 aaKnown RBP12.2□□□□□ -0.46
CLN3-211ENST00000564091 RNASE10Q5GAN6 216 aaKnown RBP12.2□□□□□ -0.46
CLN3-211ENST00000564091 Q6ZRM9 215 aa12.2□□□□□ -0.46
CLN3-211ENST00000564091 OR52I2Q8NH67 350 aa12.2□□□□□ -0.46
CLN3-211ENST00000564091 IGHV4-4A0A075B6R2 117 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 FAM25AB3EWG3 89 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 FAM25CB3EWG5 89 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 FAM25GB3EWG6 89 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 TMEM41BQ5BJD5 291 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 ZNF767PQ75MW2 155 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 OR4D10Q8NGI6 311 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 RNASE11Q8TAA1 199 aaKnown RBP12.19□□□□□ -0.46
CLN3-211ENST00000564091 RRNAD1Q96FB5 475 aaKnown RBP12.19□□□□□ -0.46
CLN3-211ENST00000564091 NARS2Q96I59 477 aaKnown RBP12.19□□□□□ -0.46
CLN3-211ENST00000564091 FUNDC2Q9BWH2 189 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 COPZ2Q9P299 210 aa12.19□□□□□ -0.46
CLN3-211ENST00000564091 TRAV10A0A0B4J240 114 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 DHRS2Q13268 280 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 BSXQ3C1V8 233 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 PSMG4Q5JS54 123 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 ARRDC1Q8N5I2 433 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 CSNK1G2-AS1Q8NCQ2 148 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 RAB40CQ96S21 281 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 TBC1D24Q9ULP9 559 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 CELA1Q9UNI1 258 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 U3KQE9 123 aa12.18□□□□□ -0.46
CLN3-211ENST00000564091 SCGB2A1O75556 95 aa12.17□□□□□ -0.46
CLN3-211ENST00000564091 UCP1P25874 307 aa12.17□□□□□ -0.46
CLN3-211ENST00000564091 SCGB2B2Q4G0G5 96 aa12.17□□□□□ -0.46
CLN3-211ENST00000564091 CENPSQ8N2Z9 138 aa12.17□□□□□ -0.46
CLN3-211ENST00000564091 OR13C8Q8NGS7 320 aa12.17□□□□□ -0.46
CLN3-211ENST00000564091 TRAV30A0A087WSZ9 112 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 IGLC1P0CG04 106 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 RORCP51449 518 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 RND2P52198 227 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 SPCS3P61009 180 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 C12orf74Q32Q52 190 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 PRSS54Q6PEW0 395 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 C16orf54Q6UWD8 224 aa12.16□□□□□ -0.46
CLN3-211ENST00000564091 CCDC71LQ8N9Z2 235 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 193.9 ms