RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 RCL1Q9Y2P8 373 aaKnown RBP7.78□□□□□ -1.16
USP3-216ENST00000559873 TRAV30A0A087WSZ9 112 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 IGHV3-21A0A0B4J1V1 117 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 H3BP45 60 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 K7EPK0 472 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 NUPL2O15504 423 aaKnown RBP7.77□□□□□ -1.17
USP3-216ENST00000559873 TGOLN2O43493 480 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 IGHV3-23P01764 117 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 RELQ04864 619 aaPredicted RBP7.77□□□□□ -1.17
USP3-216ENST00000559873 SPANXN5Q5MJ07 72 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 SLC16A13Q7RTY0 426 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 C1QL4Q86Z23 238 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 RCC1LQ96I51 464 aaKnown RBP7.77□□□□□ -1.17
USP3-216ENST00000559873 S4R3C0 116 aa7.77□□□□□ -1.17
USP3-216ENST00000559873 TRRAPQ9Y4A5 3859 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 OR2T8A6NH00 312 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 C15orf62A8K5M9 175 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 PPP5D1E7EU14 171 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 SIX6O95475 246 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 CLEC3BP05452 202 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 GPX4P36969 197 aaPredicted RBP7.76□□□□□ -1.17
USP3-216ENST00000559873 BCAP31P51572 246 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 CAV2P51636 162 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 H2BFSP57053 126 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 RRAS2P62070 204 aaPredicted RBP7.76□□□□□ -1.17
USP3-216ENST00000559873 CD69Q07108 199 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 RAB32Q13637 225 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 LRRC37A5PQ49AS3 106 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 FAM106AQ4KMX7 169 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 STX12Q86Y82 276 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 CACNG8Q8WXS5 425 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 ELOVL1Q9BW60 279 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 PEMTQ9UBM1 199 aa7.76□□□□□ -1.17
USP3-216ENST00000559873 NOTCH3Q9UM47 2321 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 E5RGE8 158 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 BMPR1BO00238 502 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 OVOL1O14753 267 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 CLN5O75503 358 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 DEDDO75618 318 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 TRBV12-3P01733 135 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 FABP1P07148 127 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 RND2P52198 227 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 SLURP1P55000 103 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 IL15RAQ13261 267 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 FCN2Q15485 313 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 TMEM14EPQ6UXP3 125 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 WFDC9Q8NEX5 89 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 OR1S2Q8NGQ3 325 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 OR4X1Q8NH49 305 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 TMEM170AQ8WVE7 144 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 PPP1R1CQ8WVI7 109 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 OR4C12Q96R67 309 aa7.75□□□□□ -1.17
USP3-216ENST00000559873 ZNF436Q9C0F3 470 aaPredicted RBP7.75□□□□□ -1.17
USP3-216ENST00000559873 LYRM2Q9NU23 88 aaPredicted RBP7.75□□□□□ -1.17
USP3-216ENST00000559873 NDUFA4O00483 81 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 GIPP09681 153 aaPredicted RBP7.74□□□□□ -1.17
USP3-216ENST00000559873 HBG1P69891 147 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 HBG2P69892 147 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 AKR1C1Q04828 323 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 FGL1Q08830 312 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 C9orf66Q5T8R8 295 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 OR8G2PQ6IF36 304 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 C11orf87Q6NUJ2 197 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 PRSS54Q6PEW0 395 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 REC114Q7Z4M0 266 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 GPHB5Q86YW7 130 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 TMEM116Q8NCL8 245 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 OR10P1Q8NGE3 313 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 THAP6Q8TBB0 222 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 DLX4Q92988 240 aaPredicted RBP7.74□□□□□ -1.17
USP3-216ENST00000559873 ACY3Q96HD9 319 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 SLC25A31Q9H0C2 315 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 FNDC4Q9H6D8 234 aaPredicted RBP7.74□□□□□ -1.17
USP3-216ENST00000559873 ZMAT5Q9UDW3 170 aaKnown RBP7.74□□□□□ -1.17
USP3-216ENST00000559873 UFC1Q9Y3C8 167 aa7.74□□□□□ -1.17
USP3-216ENST00000559873 SMCO3A2RU48 225 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 A8MWP6 167 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 SEC14L6B5MCN3 397 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 FNDC10F2Z333 226 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 F8W735 103 aaPredicted RBP7.73□□□□□ -1.17
USP3-216ENST00000559873 LGALS9O00182 355 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 SAP30O75446 220 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 OR2C1O95371 312 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 MPC2O95563 127 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 IGHV3-48P01763 117 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 METTL15P1P0C7V9 234 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 CXCL3P19876 107 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 OR10J1P30954 320 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 P2RY1P47900 373 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 SULT1A1P50225 295 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 INSL3P51460 131 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 PAX9P55771 341 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 SYNJ2BPP57105 145 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 RAP2BP61225 183 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 DLK1P80370 383 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 KLF5Q13887 457 aaPredicted RBP7.73□□□□□ -1.17
USP3-216ENST00000559873 ZNF600Q6ZNG1 722 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 ACOT7LQ6ZUV0 252 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 OR11H7Q8NGC8 314 aa7.73□□□□□ -1.17
USP3-216ENST00000559873 OR9G4Q8NGQ1 327 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms