RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PXDC1Q5TGL8 231 aa16.52■□□□□ 0.23
VPS28-208ENST00000527797 RBMS3Q6XE24 437 aaKnown RBP16.52■□□□□ 0.23
VPS28-208ENST00000527797 TMEM116Q8NCL8 245 aa16.52■□□□□ 0.23
VPS28-208ENST00000527797 MRPL36Q9P0J6 103 aaKnown RBP16.52■□□□□ 0.23
VPS28-208ENST00000527797 ZANQ9Y493 2812 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 IGKV1OR2-108A0A075B7D4 117 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 OR10J1P30954 320 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 ZNF616Q08AN1 781 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 ACSM6Q6P461 480 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 SMR3AQ99954 134 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 VSIRQ9H7M9 311 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 PFDN2Q9UHV9 154 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 PXMP4Q9Y6I8 212 aa16.51■□□□□ 0.23
VPS28-208ENST00000527797 K7EIM0 57 aa16.5■□□□□ 0.23
VPS28-208ENST00000527797 TSPAN15O95858 294 aa16.5■□□□□ 0.23
VPS28-208ENST00000527797 RPL29P47914 159 aaKnown RBP16.5■□□□□ 0.23
VPS28-208ENST00000527797 SCGB2A2Q13296 93 aa16.5■□□□□ 0.23
VPS28-208ENST00000527797 MIC13Q5XKP0 118 aa16.5■□□□□ 0.23
VPS28-208ENST00000527797 TMEM86BQ8N661 226 aa16.5■□□□□ 0.23
VPS28-208ENST00000527797 THAP8Q8NA92 274 aa16.5■□□□□ 0.23
VPS28-208ENST00000527797 RPRMQ9NS64 109 aa16.5■□□□□ 0.23
VPS28-208ENST00000527797 ZNF355PQ9NSJ1 428 aa16.5■□□□□ 0.23
VPS28-208ENST00000527797 ZFP92A6NM28 416 aa16.49■□□□□ 0.23
VPS28-208ENST00000527797 LY6G6DO95868 133 aa16.49■□□□□ 0.23
VPS28-208ENST00000527797 KLK9Q2XQG4 91 aa16.49■□□□□ 0.23
VPS28-208ENST00000527797 ACOT6Q3I5F7 207 aaPredicted RBP16.49■□□□□ 0.23
VPS28-208ENST00000527797 MED9Q9NWA0 146 aa16.49■□□□□ 0.23
VPS28-208ENST00000527797 LINC00527Q9UJ94 153 aa16.49■□□□□ 0.23
VPS28-208ENST00000527797 KLK9Q9UKQ9 250 aa16.49■□□□□ 0.23
VPS28-208ENST00000527797 SLC45A2Q9UMX9 530 aa16.49■□□□□ 0.23
VPS28-208ENST00000527797 FLNAP21333 2647 aaKnown RBP16.49■□□□□ 0.23
VPS28-208ENST00000527797 NAV3Q8IVL0 2385 aa16.49■□□□□ 0.23
VPS28-208ENST00000527797 AP4M1O00189 453 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 B2MP61769 119 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 C19orf54Q5BKX5 351 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 Q6ZS46 218 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 COMMD7Q86VX2 200 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 OR4X1Q8NH49 305 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 HRH4Q9H3N8 390 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 SLC39A9Q9NUM3 307 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 FBXL7Q9UJT9 491 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 OR2J3O76001 311 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 M6PRP20645 277 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 RAB2AP61019 212 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 PRR20EP86478 221 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 PRR20CP86479 221 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 PRR20DP86480 221 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 PRR20BP86481 221 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 PRR20AP86496 221 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 CYP2G1PQ6ZSU1 146 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 STPG3Q8N7X2 389 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 OR10G4Q8NGN3 311 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 OR10G9Q8NGN4 311 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 OR10G7Q8NGN6 311 aa16.48■□□□□ 0.23
VPS28-208ENST00000527797 TEX15Q9BXT5 2789 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 IGKV1D-37A0A075B6S9 117 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 TCRBV4S1A1TA0A5B7 111 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 NDUFB8O95169 186 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 H2AFB1P0C5Y9 115 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 CD99P14209 185 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 FOSL1P15407 271 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 BPIFCQ8NFQ6 507 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 TRGV9Q99603 122 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 PRSS22Q9GZN4 317 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 NPFFR1Q9GZQ6 430 aa16.47■□□□□ 0.23
VPS28-208ENST00000527797 TEX46H3BTG2 121 aa16.46■□□□□ 0.23
VPS28-208ENST00000527797 YIF1AO95070 293 aa16.46■□□□□ 0.23
VPS28-208ENST00000527797 LINC00869P0C866 280 aa16.46■□□□□ 0.23
VPS28-208ENST00000527797 LYPD6BQ8NI32 183 aa16.46■□□□□ 0.23
VPS28-208ENST00000527797 ZNF580Q9UK33 172 aa16.46■□□□□ 0.23
VPS28-208ENST00000527797 TRBV9A0A0B4J1U6 114 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 CLN5O75503 358 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 NPBWR1P48145 328 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 MFAP4P55083 255 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 SELENOTP62341 195 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 RPP25LQ8N5L8 163 aaKnown RBP16.45■□□□□ 0.22
VPS28-208ENST00000527797 NOL4LQ96MY1 436 aaPredicted RBP16.45■□□□□ 0.22
VPS28-208ENST00000527797 DUX5Q96PT3 197 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 SVEP1Q4LDE5 3571 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 RHOGP84095 191 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 NECAP1Q8NC96 275 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 VN1R17PQ8TDU5 208 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 RCC1LQ96I51 464 aaKnown RBP16.45■□□□□ 0.22
VPS28-208ENST00000527797 ACTR3CQ9C0K3 210 aaPredicted RBP16.45■□□□□ 0.22
VPS28-208ENST00000527797 C21orf62Q9NYP8 219 aa16.45■□□□□ 0.22
VPS28-208ENST00000527797 BAHCC1Q9P281 2608 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 NUDT19A8MXV4 375 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 ATP6V1G1O75348 118 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 SRD5A1P18405 259 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 GATA2P23769 480 aaPredicted RBP16.44■□□□□ 0.22
VPS28-208ENST00000527797 ZNF90Q03938 601 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 GCSAMLQ5JQS6 135 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 FAM122CQ6P4D5 195 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 SFT2D1Q8WV19 159 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 MARC2Q969Z3 335 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 MS4A10Q96PG2 267 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 CDC42EP3Q9UKI2 254 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 S4R3C0 116 aa16.44■□□□□ 0.22
VPS28-208ENST00000527797 CELSR1Q9NYQ6 3014 aa16.43■□□□□ 0.22
VPS28-208ENST00000527797 NOTCH2Q04721 2471 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 199.8 ms