RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 TMEM50AO95807 157 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 RNASE2P10153 161 aaKnown RBP10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 HLA-DMBP28068 263 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 TSPAN5P62079 268 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 ZNF600Q6ZNG1 722 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 Q6ZTC4 211 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 TRPT1Q86TN4 253 aaKnown RBP10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 TP53RKQ96S44 253 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 GINS3Q9BRX5 216 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 SCRT1Q9BWW7 348 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 FAM212BQ9NTI7 297 aaPredicted RBP10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 CLEC5AQ9NY25 188 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 RABAC1Q9UI14 185 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 X6R8D5 127 aa10.02□□□□□ -0.81
SQSTM1-208ENST00000485412 K7EQG2 157 aa10.01□□□□□ -0.81
SQSTM1-208ENST00000485412 ZNF688P0C7X2 276 aa10.01□□□□□ -0.81
SQSTM1-208ENST00000485412 ERHP84090 104 aaKnown RBP10.01□□□□□ -0.81
SQSTM1-208ENST00000485412 PVRIGQ6DKI7 326 aa10.01□□□□□ -0.81
SQSTM1-208ENST00000485412 STHQ8IWL8 128 aa10.01□□□□□ -0.81
SQSTM1-208ENST00000485412 STXBP6Q8NFX7 210 aa10.01□□□□□ -0.81
SQSTM1-208ENST00000485412 COMMD3Q9UBI1 195 aa10.01□□□□□ -0.81
SQSTM1-208ENST00000485412 CELA1Q9UNI1 258 aa10.01□□□□□ -0.81
SQSTM1-208ENST00000485412 SMIM31A0A1B0GVY4 71 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 TMEM127O75204 238 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 ELK1P19419 428 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 ETV6P41212 452 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 NPBWR1P48145 328 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 UCP3P55916 312 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 NCS1P62166 190 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 ZNF767PQ75MW2 155 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 CROCCP3Q8IVE0 287 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 DUSP18Q8NEJ0 188 aa10□□□□□ -0.81
SQSTM1-208ENST00000485412 TRAV2A0A0B4J234 112 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 M0R2N4 97 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 HPGDSO60760 199 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 IGKV1-17P01599 117 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 CD5P06127 495 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 RCVRNP35243 200 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 P2RY1P47900 373 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 SP6Q3SY56 376 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 TIGITQ495A1 244 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 LPCAT3Q6P1A2 487 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 SLC35G3Q8N808 338 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 DCANP1Q8TF63 244 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 RNF126Q9BV68 326 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 VCX3AQ9NNX9 186 aa9.99□□□□□ -0.81
SQSTM1-208ENST00000485412 ZNF705EA8MWA4 302 aaPredicted RBP9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 INS-IGF2F8WCM5 200 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 RTL8CO15255 209 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 IFNA17P01571 189 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 P0DMU3 169 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 FAM231AP0DMU4 169 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 FAM231CP0DMU5 169 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 MIFP14174 115 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 PGAM2P15259 253 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 NPPCP23582 126 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 CRYBB3P26998 211 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 S100GP29377 79 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 SNCAP37840 140 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 AKR1C2P52895 323 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 PIGPP57054 158 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 RND3P61587 244 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 ACTL10Q5JWF8 245 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 Q6ZRM9 215 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 LHFPL1Q86WI0 220 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 POM121L12Q8N7R1 296 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 CSNK1G2-AS1Q8NCQ2 148 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 OR4D10Q8NGI6 311 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 SCPEP1Q9HB40 452 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 KLK11Q9UBX7 282 aa9.98□□□□□ -0.81
SQSTM1-208ENST00000485412 CLN5O75503 358 aa9.97□□□□□ -0.81
SQSTM1-208ENST00000485412 APOA1P02647 267 aa9.97□□□□□ -0.81
SQSTM1-208ENST00000485412 OPRK1P41145 380 aa9.97□□□□□ -0.81
SQSTM1-208ENST00000485412 HOXA1P49639 335 aaPredicted RBP9.97□□□□□ -0.81
SQSTM1-208ENST00000485412 VBP1P61758 197 aa9.97□□□□□ -0.81
SQSTM1-208ENST00000485412 BSXQ3C1V8 233 aa9.97□□□□□ -0.81
SQSTM1-208ENST00000485412 TMEM41BQ5BJD5 291 aa9.97□□□□□ -0.81
SQSTM1-208ENST00000485412 HSPG2P98160 4391 aa9.97□□□□□ -0.81
SQSTM1-208ENST00000485412 DEFB131BA0A096LNP1 70 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 AMBPP02760 352 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 CD3DP04234 171 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 C12orf74Q32Q52 190 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 GSG1LQ6UXU4 331 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 OR4X1Q8NH49 305 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 OR52I2Q8NH67 350 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 TMEM170AQ8WVE7 144 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 GRAMD2BQ96HH9 432 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 METTL26Q96S19 204 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 RBM38Q9H0Z9 239 aaKnown RBP9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 U3KQE9 123 aa9.96□□□□□ -0.82
SQSTM1-208ENST00000485412 C3orf85A0A1B0GTC6 90 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 ZNF701M0R085 212 aaPredicted RBP9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 SPP1P10451 314 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 DEFB1P60022 68 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 PSMG4Q5JS54 123 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 MORN3Q6PF18 240 aaPredicted RBP9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 GPR141Q7Z602 305 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 LHFPL5Q8TAF8 219 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 GLMPQ8WWB7 406 aa9.95□□□□□ -0.82
SQSTM1-208ENST00000485412 TMEM230Q96A57 120 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms