RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PVRIGQ6DKI7 326 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 CLEC19AQ6UXS0 136 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 Q6ZRM9 215 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 GPHB5Q86YW7 130 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 UXS1Q8NBZ7 420 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 OR11H4Q8NGC9 324 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 GPR146Q96CH1 333 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 TXN2Q99757 166 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 C21orf62Q9NYP8 219 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 TMED3Q9Y3Q3 217 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 FAM90A26D6RGX4 464 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 PPP5D1E7EU14 171 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 TSPAN4O14817 238 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 TGOLN2O43493 480 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 PRAF2O60831 178 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 MPC2O95563 127 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 GPR183P32249 361 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 KRTAP10-11P60412 298 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 B2MP61769 119 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 LGALSLQ3ZCW2 172 aaPredicted RBP9.06□□□□□ -0.96
VPS52-213ENST00000461743 FAM106AQ4KMX7 169 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 LYZL2Q7Z4W2 148 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 OR2K2Q8NGT1 345 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 C20orf85Q9H1P6 137 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 HSPB7Q9UBY9 170 aa9.06□□□□□ -0.96
VPS52-213ENST00000461743 ZNF256Q9Y2P7 627 aaPredicted RBP9.06□□□□□ -0.96
VPS52-213ENST00000461743 I3L2K1 104 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 IGLV1-51P01701 117 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 TCRBP04435 133 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 CLEC3BP05452 202 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 OR4E1P0C645 316 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 RNASE2P10153 161 aaKnown RBP9.05□□□□□ -0.96
VPS52-213ENST00000461743 ELLP55199 621 aaPredicted RBP9.05□□□□□ -0.96
VPS52-213ENST00000461743 ATP5IP56385 69 aaPredicted RBP9.05□□□□□ -0.96
VPS52-213ENST00000461743 FLI1Q01543 452 aaPredicted RBP9.05□□□□□ -0.96
VPS52-213ENST00000461743 TNFRSF9Q07011 255 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 DHRS2Q13268 280 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 ANKRD55Q3KP44 614 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 LYG2Q86SG7 212 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 COQ8AQ8NI60 647 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 MRAPQ8TCY5 172 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 SCARB1Q8WTV0 552 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 MISP3Q96FF7 219 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 ZNF436Q9C0F3 470 aaPredicted RBP9.05□□□□□ -0.96
VPS52-213ENST00000461743 NUDT15Q9NV35 164 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 PRR13Q9NZ81 148 aa9.05□□□□□ -0.96
VPS52-213ENST00000461743 C9orf170A2RU37 121 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 CEBPZOSA8MTT3 80 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 SCGB2A1O75556 95 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 LY86O95711 162 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 IGHV3-23P01764 117 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 H2AFB2P0C5Z0 115 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 MFAP4P55083 255 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 S100A12P80511 92 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 RELQ04864 619 aaPredicted RBP9.04□□□□□ -0.96
VPS52-213ENST00000461743 C2orf83Q53S99 150 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 SPINK9Q5DT21 86 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 IL34Q6ZMJ4 242 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 LINC00518Q8N0U6 118 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 SLC24A4Q8NFF2 622 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 OR1S1Q8NH92 325 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 TMEM190Q8WZ59 177 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 MARC2Q969Z3 335 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 HIPK2Q9H2X6 1198 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 HEYLQ9NQ87 328 aaPredicted RBP9.04□□□□□ -0.96
VPS52-213ENST00000461743 PFDN2Q9UHV9 154 aa9.04□□□□□ -0.96
VPS52-213ENST00000461743 OR2T8A6NH00 312 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 F8W735 103 aaPredicted RBP9.03□□□□□ -0.96
VPS52-213ENST00000461743 K7EIL1 84 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 NDUFA4O00483 81 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 PITX3O75364 302 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 MED6O75586 246 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 OR2C1O95371 312 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 MT-CO2P00403 227 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 CSN3P07498 182 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 GIPP09681 153 aaPredicted RBP9.03□□□□□ -0.96
VPS52-213ENST00000461743 NPBWR1P48145 328 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 OPCMLQ14982 345 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 C4orf46Q504U0 113 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 Q56UQ5 140 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 LCN12Q6JVE5 192 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 EIF4E3Q8N5X7 224 aaKnown RBP9.03□□□□□ -0.96
VPS52-213ENST00000461743 RNASEH2CQ8TDP1 164 aaKnown RBP9.03□□□□□ -0.96
VPS52-213ENST00000461743 DTD1Q8TEA8 209 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 LINC00052Q96N35 136 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 TECRQ9NZ01 308 aaKnown RBP9.03□□□□□ -0.96
VPS52-213ENST00000461743 UFC1Q9Y3C8 167 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 S4R3C0 116 aa9.03□□□□□ -0.96
VPS52-213ENST00000461743 TRAV6A0A075B6T7 132 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 WI2-2373I1.2A0A1W2PRP0 233 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 C2orf70A6NJV1 201 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 NUPL2O15504 423 aaKnown RBP9.02□□□□□ -0.97
VPS52-213ENST00000461743 SSNA1O43805 119 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 PRB2P02812 416 aaPredicted RBP9.02□□□□□ -0.97
VPS52-213ENST00000461743 CXCL3P19876 107 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 NPY1RP25929 384 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 OPRK1P41145 380 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 ETFRF1Q6IPR1 90 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 MITD1Q8WV92 249 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 PINX1Q96BK5 328 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms