RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CD69Q07108 199 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 HIST2H2BCQ6DN03 193 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 NPBQ8NG41 125 aa16.82■□□□□ 0.28
PTPRF-207ENST00000436724 FNDC4Q9H6D8 234 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-207ENST00000436724 AP4M1O00189 453 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 RPS10P46783 165 aaKnown RBP16.81■□□□□ 0.28
PTPRF-207ENST00000436724 OR2T6Q8NHC8 308 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 MAP1LC3B2A6NCE7 125 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 CXorf65A6NEN9 183 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 NCBP2LA6PVI3 153 aaKnown RBP16.81■□□□□ 0.28
PTPRF-207ENST00000436724 MSMBP08118 114 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 MFAP2P55001 183 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 DSCR9P59020 149 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 MAP1LC3BQ9GZQ8 125 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 PXMP4Q9Y6I8 212 aa16.81■□□□□ 0.28
PTPRF-207ENST00000436724 TRAV40A0A0B4J280 105 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 J3QKU1 62 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 YIF1AO95070 293 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 CNIH1O95406 144 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 S100A8P05109 93 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 OPRK1P41145 380 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 BRD3OSQ6XYD6 125 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 FAM103A1Q9BTL3 118 aaKnown RBP16.8■□□□□ 0.28
PTPRF-207ENST00000436724 SLC39A9Q9NUM3 307 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 VAX2Q9UIW0 290 aa16.8■□□□□ 0.28
PTPRF-207ENST00000436724 PMS2P11Q13670 270 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 C5orf64Q2M2E5 130 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 SLC16A13Q7RTY0 426 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 Q8N6K4 173 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 MAPK1IP1LQ8NDC0 245 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 URGCP-MRPS24S4R325 110 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 B4DEV8 164 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 MBP02144 154 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 TMEM11P17152 192 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 SUB1P53999 127 aaKnown RBP eCLIP16.79■□□□□ 0.28
PTPRF-207ENST00000436724 EBI3Q14213 229 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 TMEM144Q7Z5S9 345 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 ACY3Q96HD9 319 aa16.79■□□□□ 0.28
PTPRF-207ENST00000436724 TGIF2-C20orf24A0A0A6YYL0 155 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 FNDC10F2Z333 226 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 NANPQ8TBE9 248 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 RAB24Q969Q5 203 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 SDF2L1Q9HCN8 221 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 MRPL36Q9P0J6 103 aaKnown RBP16.78■□□□□ 0.28
PTPRF-207ENST00000436724 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.78■□□□□ 0.282e-12■■□□□ 13.4
PTPRF-207ENST00000436724 SLC25A16P16260 332 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 ACOT6Q3I5F7 207 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-207ENST00000436724 STPG3Q8N7X2 389 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 MISP3Q96FF7 219 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 C7orf69Q9H7B7 122 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 HIF1ANQ9NWT6 349 aa16.78■□□□□ 0.28
PTPRF-207ENST00000436724 IGHV4-38-2P0DP08 117 aa16.77■□□□□ 0.28
PTPRF-207ENST00000436724 GATA2P23769 480 aaPredicted RBP16.77■□□□□ 0.28
PTPRF-207ENST00000436724 B2MP61769 119 aa16.77■□□□□ 0.28
PTPRF-207ENST00000436724 RNASEH2CQ8TDP1 164 aaKnown RBP16.77■□□□□ 0.28
PTPRF-207ENST00000436724 TMPRSS5Q9H3S3 457 aa16.77■□□□□ 0.28
PTPRF-207ENST00000436724 DMRT1Q9Y5R6 373 aa16.77■□□□□ 0.28
PTPRF-207ENST00000436724 A0A096LNT2 108 aa16.77■□□□□ 0.27
PTPRF-207ENST00000436724 IGHV3-21A0A0B4J1V1 117 aa16.77■□□□□ 0.27
PTPRF-207ENST00000436724 IGHV1-69DA0A0B4J2H0 117 aa16.77■□□□□ 0.27
PTPRF-207ENST00000436724 IGHV1-69P01742 117 aa16.77■□□□□ 0.27
PTPRF-207ENST00000436724 SMIM6P0DI80 62 aa16.77■□□□□ 0.27
PTPRF-207ENST00000436724 FXYD3Q14802 87 aa16.77■□□□□ 0.27
PTPRF-207ENST00000436724 ABHD5Q8WTS1 349 aa16.77■□□□□ 0.27
PTPRF-207ENST00000436724 CACNG8Q8WXS5 425 aa16.77■□□□□ 0.27
PTPRF-207ENST00000436724 ACTR3CQ9C0K3 210 aaPredicted RBP16.77■□□□□ 0.27
PTPRF-207ENST00000436724 CTXND1A0A1B0GTU2 59 aa16.76■□□□□ 0.27
PTPRF-207ENST00000436724 B4DSR2 109 aa16.76■□□□□ 0.27
PTPRF-207ENST00000436724 OR10J1P30954 320 aa16.76■□□□□ 0.27
PTPRF-207ENST00000436724 PNRC1Q12796 327 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-207ENST00000436724 KIAA0141Q14154 515 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-207ENST00000436724 ZNF114Q8NC26 417 aa16.76■□□□□ 0.27
PTPRF-207ENST00000436724 SOX21Q9Y651 276 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-207ENST00000436724 FAM106CPP0CH98 169 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 GPX4P36969 197 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-207ENST00000436724 CD81P60033 236 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 RAB31Q13636 194 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 MRPL41Q8IXM3 137 aaKnown RBP16.75■□□□□ 0.27
PTPRF-207ENST00000436724 SLC35E1Q96K37 410 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 CYB5BO43169 146 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 CLN5O75503 358 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 IFNA1P01562 189 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 BRS3P32247 399 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 CDC34P49427 236 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-207ENST00000436724 CX3CL1P78423 397 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 NDPQ00604 133 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 ZNF674Q2M3X9 581 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 NPIPB3Q92617 1050 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 TMEM242Q9NWH2 141 aa16.75■□□□□ 0.27
PTPRF-207ENST00000436724 F11RQ9Y624 299 aaKnown RBP16.75■□□□□ 0.27
PTPRF-207ENST00000436724 AVPP01185 164 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 S100A9P06702 114 aaKnown RBP16.74■□□□□ 0.27
PTPRF-207ENST00000436724 LINC00869P0C866 280 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 RPL29P47914 159 aaKnown RBP16.74■□□□□ 0.27
PTPRF-207ENST00000436724 S100A12P80511 92 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 PRR20EP86478 221 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 PRR20CP86479 221 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 PRR20DP86480 221 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 PRR20BP86481 221 aa16.74■□□□□ 0.27
PTPRF-207ENST00000436724 PRR20AP86496 221 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms