RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 EIF5AL1Q6IS14 154 aaKnown RBP11.15□□□□□ -0.62
SKA1-202ENST00000398452 ACSM6Q6P461 480 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 Q6ZS46 218 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 Q8N2B8 174 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 ZNF709Q8N972 641 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 CXorf58Q96LI9 332 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 NPVFQ9HCQ7 196 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 FBXL7Q9UJT9 491 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 CUBNO60494 3623 aa11.15□□□□□ -0.63
SKA1-202ENST00000398452 IGLV11-55A0A075B6I3 123 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 UBE2L5PA0A1B0GUS4 154 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 FAM223BA6NKX1 122 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 PMS2P5A8MQ11 134 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 FNDC10F2Z333 226 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 C17orf112F2Z3M2 114 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 PRH1P02810 166 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 NPBWR1P48145 328 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 TPPP2P59282 170 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 RHOGP84095 191 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 ATP5G2Q06055 141 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 TMEM95Q3KNT9 176 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 LAMTOR1Q6IAA8 161 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 TEX38Q6PEX7 206 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 Q6ZSV7 163 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 FAM223AQ8IWN6 122 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 COMMD1Q8N668 190 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 NECAP1Q8NC96 275 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 OR4F5Q8NH21 305 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 TMEM170AQ8WVE7 144 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 ACY3Q96HD9 319 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 MS4A10Q96PG2 267 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 GAR1Q9NY12 217 aaKnown RBP11.14□□□□□ -0.63
SKA1-202ENST00000398452 PLXNB1O43157 2135 aa11.14□□□□□ -0.63
SKA1-202ENST00000398452 A0A0G2JLM5 398 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 TMEM89A2RUT3 159 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 FGF7P21781 194 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 MFAP4P55083 255 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 ARL16Q0P5N6 197 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 C19orf35Q6ZS72 473 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 HAPLN4Q86UW8 402 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 EEF1AKMT3Q96AZ1 226 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 USMG5Q96IX5 58 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 C19orf24Q9BVV8 132 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 KCNIP2Q9NS61 270 aa11.13□□□□□ -0.63
SKA1-202ENST00000398452 IGHV3-21A0A0B4J1V1 117 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 MPDU1O75352 247 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 FABP1P07148 127 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 ELANEP08246 267 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 Q56UQ5 140 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 RPL7L1Q6DKI1 246 aaKnown RBP11.12□□□□□ -0.63
SKA1-202ENST00000398452 PVRIGQ6DKI7 326 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 TEPPQ6URK8 271 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 UBAC2Q8NBM4 344 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 OR4X2Q8NGF9 303 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 VN1R17PQ8TDU5 208 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 GNPNAT1Q96EK6 184 aaPredicted RBP11.12□□□□□ -0.63
SKA1-202ENST00000398452 BSCL2Q96G97 398 aaPredicted RBP11.12□□□□□ -0.63
SKA1-202ENST00000398452 FANCD2OSQ96PS1 177 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 C16orf95Q9H693 158 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 C21orf62Q9NYP8 219 aa11.12□□□□□ -0.63
SKA1-202ENST00000398452 TRAV30A0A087WSZ9 112 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 ZFP92A6NM28 416 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 GNG7O60262 68 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 NDUFA7O95182 113 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 BRI3O95415 125 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 IGHG4P01861 327 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 PPIFP30405 207 aaKnown RBP11.11□□□□□ -0.63
SKA1-202ENST00000398452 RND2P52198 227 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 MFAP2P55001 183 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 GAMTQ14353 236 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 C15orf32Q32M92 178 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 C19orf54Q5BKX5 351 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 FAM209BQ5JX69 171 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 BTNL8Q6UX41 500 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 TMEM144Q7Z5S9 345 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 ZNF329Q86UD4 541 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 BAP18Q8IXM2 172 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 HSD17B11Q8NBQ5 300 aa11.11□□□□□ -0.63
SKA1-202ENST00000398452 WDR61Q9GZS3 305 aaKnown RBP11.11□□□□□ -0.63
SKA1-202ENST00000398452 TRBV7-1A0A0A6YYK4 115 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 A0A1B0GUS0 222 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 PRSS46E5RG02 174 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 I3L2K1 104 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 SOX15O60248 233 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 NDUFB8O95169 186 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 RAB9AP51151 201 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 FOXE3Q13461 319 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 VWC2Q2TAL6 325 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 OR4X1Q8NH49 305 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 SCARB1Q8WTV0 552 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 ST8SIA2Q92186 375 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 NPIPB3Q92617 1050 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 TAF15Q92804 592 aaKnown RBP eCLIP11.1□□□□□ -0.63
SKA1-202ENST00000398452 TXN2Q99757 166 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 PARD6GQ9BYG4 376 aaPredicted RBP11.1□□□□□ -0.63
SKA1-202ENST00000398452 FNDC4Q9H6D8 234 aaPredicted RBP11.1□□□□□ -0.63
SKA1-202ENST00000398452 WFDC1Q9HC57 220 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 WDR83OSQ9Y284 106 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 SVEP1Q4LDE5 3571 aa11.1□□□□□ -0.63
SKA1-202ENST00000398452 TRBV9A0A0B4J1U6 114 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms