RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 VDAC2P45880 294 aaPredicted RBP4.57□□□□□ -1.68
VPS13C-204ENST00000395898 LINC01559Q495D7 138 aa4.57□□□□□ -1.68
VPS13C-204ENST00000395898 TBL2Q9Y4P3 447 aaKnown RBP4.57□□□□□ -1.68
VPS13C-204ENST00000395898 TRAV14DV4A0A0A6YYC5 116 aa4.57□□□□□ -1.68
VPS13C-204ENST00000395898 IGKV3OR2-268A0A0C4DH90 116 aa4.57□□□□□ -1.68
VPS13C-204ENST00000395898 FAM166AQ6J272 317 aa4.57□□□□□ -1.68
VPS13C-204ENST00000395898 GNB1LQ9BYB4 327 aa4.57□□□□□ -1.68
VPS13C-204ENST00000395898 PPBPP02775 128 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 ZP1P60852 638 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 CACNG7P62955 275 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 C9orf106Q8NAJ2 232 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 C8orf46Q8TAG6 207 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 C18orf15Q96N68 181 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 A0A0G2JMM0 328 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 A0A1W2PPB8 328 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 A0A1W2PRS3 328 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 KIR3DP1A8MWS1 328 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 J3QRE1 110 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 UPK2O00526 184 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 HOXA5P20719 270 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 LAIR2Q6ISS4 152 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 F11RQ9Y624 299 aaKnown RBP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 TGFBR3LH3BV60 316 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 COLCA1Q6ZS62 124 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 LINC01587Q99440 93 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 DYSFO75923 2080 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 PSMB11A5LHX3 300 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 IGHV3-23P01764 117 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 RNASE4P34096 147 aaKnown RBP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 CMC4P56277 68 aaPredicted RBP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 TFF3Q07654 80 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 SRSF1Q07955 248 aaKnown RBP eCLIP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 TTC9CQ8N5M4 171 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 FAM216BQ8N7L0 139 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 NXT2Q9NPJ8 142 aaKnown RBP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 RAMP3O60896 148 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 NUDT11Q96G61 164 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 IGHV3-66A0A0C4DH42 116 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 CELA3BP08861 270 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 CEP192Q8TEP8 1941 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 IGHV3OR16-10A0A075B7F0 116 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 A0A1W2PRE2 83 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 ERVH48-1M5A8F1 160 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 SMAD7O15105 426 aaKnown RBP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 SRP19P09132 144 aaKnown RBP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 CD7P09564 240 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 LEPP41159 167 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 Q5BKY6 102 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 OR10J3Q5JRS4 329 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 COQ2Q96H96 371 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 ATOH7Q8N100 152 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 ARL6IP6Q8N6S5 226 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 RNF125Q96EQ8 232 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 A8MXK9 166 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 TYMSP04818 313 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 EMP1P54849 157 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 IFITM2Q01629 132 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 ZNF600Q6ZNG1 722 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 FAM89BQ8N5H3 189 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 MRPL20Q9BYC9 149 aaKnown RBP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 AKIRIN1Q9H9L7 192 aaPredicted RBP4.56□□□□□ -1.68
VPS13C-204ENST00000395898 ZNF257Q9Y2Q1 563 aa4.56□□□□□ -1.68
VPS13C-204ENST00000395898 H3BTX0 84 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 LINC00614P0C842 121 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 MPZP25189 248 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 OTX1P32242 354 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-204ENST00000395898 FOXA3P55318 350 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-204ENST00000395898 LINC00518Q8N0U6 118 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 TSPAN13O95857 204 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 PRCDQ00LT1 54 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 ZNF525Q8N782 197 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-204ENST00000395898 NTN3O00634 580 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-204ENST00000395898 SIGLEC5O15389 551 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 DUTP33316 252 aaKnown RBP4.55□□□□□ -1.68
VPS13C-204ENST00000395898 ORMDL2Q53FV1 153 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 GCSAMLQ5JQS6 135 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 ATP5L2Q7Z4Y8 100 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 DTX1Q86Y01 620 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 ZNF837Q96EG3 531 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-204ENST00000395898 SPOCK3Q9BQ16 436 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 RNF126Q9BV68 326 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 ROS1P08922 2347 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 IGHV1-18A0A0C4DH31 117 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 ZNF324BQ6AW86 544 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-204ENST00000395898 PRDM6Q9NQX0 595 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.55□□□□□ -1.683e-10■■■■□ 21.5
VPS13C-204ENST00000395898 EGR1P18146 543 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 RNF182Q8N6D2 247 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 SLC25A28Q96A46 364 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 TMEM242Q9NWH2 141 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 GVINP1Q7Z2Y8 2422 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 SHISA3A0PJX4 238 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 SLC17A3O00476 420 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 TDGF1P13385 188 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 METRNQ9UJH8 293 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 PAX8Q06710 450 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 BEND2Q8NDZ0 799 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 ST20Q9HBF5 79 aa4.55□□□□□ -1.68
VPS13C-204ENST00000395898 OSTCQ9NRP0 149 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms