RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 IGHV1-3A0A0C4DH29 117 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 A0A1W2PPI3 338 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 M0QZK8 103 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 HMGB3O15347 200 aaKnown RBP8.12□□□□□ -1.11
VPS53-202ENST00000389040 CYB5BO43169 146 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 CA2P00918 260 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 IGHV4-59P01825 116 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 OPRK1P41145 380 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 FLI1Q01543 452 aaPredicted RBP8.12□□□□□ -1.11
VPS53-202ENST00000389040 EBI3Q14213 229 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 TMEM177Q53S58 311 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 PRIMA1Q86XR5 153 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 PDPNQ86YL7 162 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 DYNAPQ8N1N2 210 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 PIFOQ8TCI5 191 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 RAB24Q969Q5 203 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 FLYWCH2Q96CP2 140 aaKnown RBP8.12□□□□□ -1.11
VPS53-202ENST00000389040 RNF5Q99942 180 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 MLXQ9UH92 298 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 ZFHX3Q15911 3703 aa8.12□□□□□ -1.11
VPS53-202ENST00000389040 TEX50A0A1B0GTY4 177 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 MDFIC2A0A1B0GVS7 189 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 H3BUX3 64 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 VENTXO95231 258 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 OPN1MWP04001 364 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 CRYBA1P05813 215 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 OPN1MW2P0DN77 364 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 OPN1MW3P0DN78 364 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 DIAPH2-AS1Q14236 149 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 FAM90A2PQ658T7 463 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 SLC35E3Q7Z769 313 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 OR4C13Q8NGP0 309 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 OR5B3Q8NH48 314 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 TMEM158Q8WZ71 300 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 TVP23CQ96ET8 276 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 MGST2Q99735 147 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 NABP2Q9BQ15 211 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 ESM1Q9NQ30 184 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 SOX21Q9Y651 276 aaPredicted RBP8.11□□□□□ -1.11
VPS53-202ENST00000389040 SEC14L6B5MCN3 397 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 TIMM23O14925 209 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 TAGLN2P37802 199 aaKnown RBP8.11□□□□□ -1.11
VPS53-202ENST00000389040 CDC34P49427 236 aaPredicted RBP8.11□□□□□ -1.11
VPS53-202ENST00000389040 PSMB3P49720 205 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 RAB13P51153 203 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 MEF2BQ02080 365 aaPredicted RBP8.11□□□□□ -1.11
VPS53-202ENST00000389040 ARSJQ5FYB0 599 aaPredicted RBP8.11□□□□□ -1.11
VPS53-202ENST00000389040 CFHR4Q92496 578 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 HIST1H2BAQ96A08 127 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 ISOC2Q96AB3 205 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 GGTLC1Q9BX51 225 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 TMPRSS5Q9H3S3 457 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 NPVFQ9HCQ7 196 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 MANBALQ9NQG1 85 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 KCNIP2Q9NS61 270 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 WASHC3Q9Y3C0 194 aa8.11□□□□□ -1.11
VPS53-202ENST00000389040 LSM4Q9Y4Z0 139 aaKnown RBP8.11□□□□□ -1.11
VPS53-202ENST00000389040 SETD2Q9BYW2 2564 aaPredicted RBP8.1□□□□□ -1.11
VPS53-202ENST00000389040 A0A1B0GUS0 222 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 A6NDX4 124 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 YIF1AO95070 293 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 MT-ND4LP03901 98 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 FOLR2P14207 255 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 ATP5IP56385 69 aaPredicted RBP8.1□□□□□ -1.11
VPS53-202ENST00000389040 RPL8P62917 257 aaKnown RBP8.1□□□□□ -1.11
VPS53-202ENST00000389040 SMUG1Q53HV7 270 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 GCSAMLQ5JQS6 135 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 TEPPQ6URK8 271 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 MOB3BQ86TA1 216 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 OR2T10Q8NGZ9 312 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 OR4A5Q8NH83 315 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 VSTM2AQ8TAG5 236 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 COMMD5Q9GZQ3 224 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 C1RLQ9NZP8 487 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 PXMP4Q9Y6I8 212 aa8.1□□□□□ -1.11
VPS53-202ENST00000389040 A0A087WWC5 75 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 FNDC10F2Z333 226 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 OR2C1O95371 312 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 MOSP00540 346 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 DEFA4P12838 97 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 CD81P60033 236 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 IQCF2Q8IXL9 164 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 TMEM167AQ8TBQ9 72 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 RBM14Q96PK6 669 aaKnown RBP8.09□□□□□ -1.11
VPS53-202ENST00000389040 NPFFR1Q9GZQ6 430 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 A0A1W2PPV4 95 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 NDUFA7O95182 113 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 PNRC1Q12796 327 aaPredicted RBP8.09□□□□□ -1.11
VPS53-202ENST00000389040 RAB31Q13636 194 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 BSXQ3C1V8 233 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 C2orf83Q53S99 150 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 MIC13Q5XKP0 118 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 OR1L8Q8NGR8 309 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 NDUFA4L2Q9NRX3 87 aa8.09□□□□□ -1.11
VPS53-202ENST00000389040 FAM181BA6NEQ2 426 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 B4DEV8 164 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 NDUFS6O75380 124 aaKnown RBP8.08□□□□□ -1.12
VPS53-202ENST00000389040 TSPAN9O75954 239 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 IGLV2-23P01705 113 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 CTRB1P17538 263 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms