RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RND2P52198 227 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 ETFRF1Q6IPR1 90 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 NPIPB3Q92617 1050 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 CXorf58Q96LI9 332 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 VSIRQ9H7M9 311 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 ZNF705EA8MWA4 302 aaPredicted RBP14.58□□□□□ -0.08
CLN3-206ENST00000360019 C17orf112F2Z3M2 114 aa14.58□□□□□ -0.08
CLN3-206ENST00000360019 SOX15O60248 233 aa14.58□□□□□ -0.08
CLN3-206ENST00000360019 CAMLGP49069 296 aa14.58□□□□□ -0.08
CLN3-206ENST00000360019 SERF2P84101 59 aa14.58□□□□□ -0.08
CLN3-206ENST00000360019 ACSM6Q6P461 480 aa14.58□□□□□ -0.08
CLN3-206ENST00000360019 ZNF709Q8N972 641 aa14.58□□□□□ -0.08
CLN3-206ENST00000360019 NOL4LQ96MY1 436 aaPredicted RBP14.58□□□□□ -0.08
CLN3-206ENST00000360019 NSD1Q96L73 2696 aaPredicted RBP14.58□□□□□ -0.08
CLN3-206ENST00000360019 UMAD1C9J7I0 102 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 ELLP55199 621 aaPredicted RBP14.57□□□□□ -0.08
CLN3-206ENST00000360019 DEFA5Q01523 94 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 KLK9Q2XQG4 91 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 TMEM86BQ8N661 226 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 TMEM116Q8NCL8 245 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 LRRC20Q8TCA0 184 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 KLK9Q9UKQ9 250 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 NF1P21359 2839 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 IGKV1D-37A0A075B6S9 117 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 OR2J3O76001 311 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 RAB5CP51148 216 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 AKR1C8PQ5T2L2 129 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 THAP8Q8NA92 274 aa14.57□□□□□ -0.08
CLN3-206ENST00000360019 FOSL1P15407 271 aa14.56□□□□□ -0.08
CLN3-206ENST00000360019 OR10J1P30954 320 aa14.56□□□□□ -0.08
CLN3-206ENST00000360019 TMEM95Q3KNT9 176 aa14.56□□□□□ -0.08
CLN3-206ENST00000360019 MIC13Q5XKP0 118 aa14.56□□□□□ -0.08
CLN3-206ENST00000360019 RBMS3Q6XE24 437 aaKnown RBP14.56□□□□□ -0.08
CLN3-206ENST00000360019 Q6ZRG5 221 aa14.56□□□□□ -0.08
CLN3-206ENST00000360019 SAT2Q96F10 170 aaPredicted RBP14.56□□□□□ -0.08
CLN3-206ENST00000360019 RPRMQ9NS64 109 aa14.56□□□□□ -0.08
CLN3-206ENST00000360019 TRIM77I1YAP6 450 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 AP4M1O00189 453 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 CYB5BO43169 146 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 NDUFB8O95169 186 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 PPIFP30405 207 aaKnown RBP14.55□□□□□ -0.08
CLN3-206ENST00000360019 FFAR4Q5NUL3 377 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 SLC7A5P1Q8MH63 180 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 FAM213BQ8TBF2 198 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 ESM1Q9NQ30 184 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 SLC45A2Q9UMX9 530 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 PXMP4Q9Y6I8 212 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 TRBV9A0A0B4J1U6 114 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 MFSD2BA6NFX1 497 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 DNAJC9-AS1A6NH13 148 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 RAB2AP61019 212 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 RAB31Q13636 194 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 PXDC1Q5TGL8 231 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 Q71RC1 249 aaPredicted RBP14.55□□□□□ -0.08
CLN3-206ENST00000360019 STPG3Q8N7X2 389 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 OR4X1Q8NH49 305 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 NPFFR1Q9GZQ6 430 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 GSX1Q9H4S2 264 aaPredicted RBP14.55□□□□□ -0.08
CLN3-206ENST00000360019 THYN1Q9P016 225 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 CDC42EP3Q9UKI2 254 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 S4R3C0 116 aa14.55□□□□□ -0.08
CLN3-206ENST00000360019 TSPAN9O75954 239 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 YIF1AO95070 293 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 HIST1H1BP16401 226 aaKnown RBP14.54□□□□□ -0.08
CLN3-206ENST00000360019 SRD5A1P18405 259 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 GATA2P23769 480 aaPredicted RBP14.54□□□□□ -0.08
CLN3-206ENST00000360019 RPL29P47914 159 aaKnown RBP14.54□□□□□ -0.08
CLN3-206ENST00000360019 PRR20EP86478 221 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 PRR20CP86479 221 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 PRR20DP86480 221 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 PRR20BP86481 221 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 PRR20AP86496 221 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 TMEM41BQ5BJD5 291 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 GCSAMLQ5JQS6 135 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 ZNF702PQ9H963 129 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 ZNF355PQ9NSJ1 428 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 FBXL7Q9UJT9 491 aa14.54□□□□□ -0.08
CLN3-206ENST00000360019 LINC00862A6NCI5 91 aa14.53□□□□□ -0.08
CLN3-206ENST00000360019 ZFP92A6NM28 416 aa14.53□□□□□ -0.08
CLN3-206ENST00000360019 TEX46H3BTG2 121 aa14.53□□□□□ -0.08
CLN3-206ENST00000360019 B2MP61769 119 aa14.53□□□□□ -0.08
CLN3-206ENST00000360019 RHOGP84095 191 aa14.53□□□□□ -0.08
CLN3-206ENST00000360019 ZNF90Q03938 601 aa14.53□□□□□ -0.08
CLN3-206ENST00000360019 PRSS22Q9GZN4 317 aa14.53□□□□□ -0.08
CLN3-206ENST00000360019 ZNF580Q9UK33 172 aa14.53□□□□□ -0.08
CLN3-206ENST00000360019 TCRBV4S1A1TA0A5B7 111 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 CYSRT1A8MQ03 144 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 F8W735 103 aaPredicted RBP14.52□□□□□ -0.08
CLN3-206ENST00000360019 TSPAN15O95858 294 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 LINC00869P0C866 280 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 BLOC1S1P78537 153 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 CFHR3Q02985 330 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 ZNF616Q08AN1 781 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 SCGB2A2Q13296 93 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 ZNF726P1Q15940 193 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 NDUFA5Q16718 116 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 CYP2G1PQ6ZSU1 146 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 RPP25LQ8N5L8 163 aaKnown RBP14.52□□□□□ -0.08
CLN3-206ENST00000360019 BPIFCQ8NFQ6 507 aa14.52□□□□□ -0.08
CLN3-206ENST00000360019 MS4A10Q96PG2 267 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms