RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TEX46H3BTG2 121 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 I3L2K1 104 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 MT-CO2P00403 227 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 GAMTQ14353 236 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 KLK9Q2XQG4 91 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 HSD17B11Q8NBQ5 300 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 OR2T6Q8NHC8 308 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 KLK9Q9UKQ9 250 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 CYB5BO43169 146 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 MDKP21741 143 aaPredicted RBP15.57■□□□□ 0.08
CLN3-205ENST00000359984 PPIFP30405 207 aaKnown RBP15.57■□□□□ 0.08
CLN3-205ENST00000359984 RNF141Q8WVD5 230 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 GINS3Q9BRX5 216 aa15.57■□□□□ 0.08
CLN3-205ENST00000359984 WDR61Q9GZS3 305 aaKnown RBP15.57■□□□□ 0.08
CLN3-205ENST00000359984 MRPL36Q9P0J6 103 aaKnown RBP15.57■□□□□ 0.08
CLN3-205ENST00000359984 K7EIM0 57 aa15.56■□□□□ 0.08
CLN3-205ENST00000359984 TREML4Q6UXN2 200 aa15.56■□□□□ 0.08
CLN3-205ENST00000359984 SCGB1C1Q8TD33 95 aa15.56■□□□□ 0.08
CLN3-205ENST00000359984 TAF15Q92804 592 aaKnown RBP eCLIP15.56■□□□□ 0.08
CLN3-205ENST00000359984 PARD6GQ9BYG4 376 aaPredicted RBP15.56■□□□□ 0.08
CLN3-205ENST00000359984 NPVFQ9HCQ7 196 aa15.56■□□□□ 0.08
CLN3-205ENST00000359984 ZNF355PQ9NSJ1 428 aa15.56■□□□□ 0.08
CLN3-205ENST00000359984 WDR83OSQ9Y284 106 aa15.56■□□□□ 0.08
CLN3-205ENST00000359984 OR2J3O76001 311 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 NDUFB8O95169 186 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 ZP3P21754 424 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 RUNX1Q01196 453 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 CFHR3Q02985 330 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 ETFRF1Q6IPR1 90 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 CCDC28AQ8IWP9 274 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 SLC35E1Q96K37 410 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 LINC00052Q96N35 136 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 JMJD8Q96S16 334 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 PLA2G2EQ9NZK7 142 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 RFNGQ9Y644 331 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 CUBNO60494 3623 aa15.55■□□□□ 0.08
CLN3-205ENST00000359984 TRBV9A0A0B4J1U6 114 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 HIST1H1BP16401 226 aaKnown RBP15.54■□□□□ 0.08
CLN3-205ENST00000359984 FGF7P21781 194 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 ATP6V0CP27449 155 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 DEFA5Q01523 94 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 AKR1C1Q04828 323 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 BTNL8Q6UX41 500 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 ACY3Q96HD9 319 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 MS4A10Q96PG2 267 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 FBXL7Q9UJT9 491 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 Q6ZSV7 163 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 TMEM144Q7Z5S9 345 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 NPIPB3Q92617 1050 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 SH3BGRL3Q9H299 93 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 THYN1Q9P016 225 aa15.54■□□□□ 0.08
CLN3-205ENST00000359984 RPL15P61313 204 aaKnown RBP15.53■□□□□ 0.08
CLN3-205ENST00000359984 EIF5AL1Q6IS14 154 aaKnown RBP15.53■□□□□ 0.08
CLN3-205ENST00000359984 RSG1Q9BU20 258 aa15.53■□□□□ 0.08
CLN3-205ENST00000359984 LSM4Q9Y4Z0 139 aaKnown RBP15.53■□□□□ 0.08
CLN3-205ENST00000359984 KRBOX1C9JBD0 128 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 TSPAN9O75954 239 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 IGLV1-40P01703 118 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 SULT1A2P50226 295 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 RND2P52198 227 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 RHOGP84095 191 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 TEPPQ6URK8 271 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 ZNF329Q86UD4 541 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 SAT2Q96F10 170 aaPredicted RBP15.52■□□□□ 0.08
CLN3-205ENST00000359984 SERTAD4Q9NUC0 356 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 NF1P21359 2839 aa15.52■□□□□ 0.08
CLN3-205ENST00000359984 IGKV1OR2-108A0A075B7D4 117 aa15.52■□□□□ 0.07
CLN3-205ENST00000359984 CRYBA1P05813 215 aa15.52■□□□□ 0.07
CLN3-205ENST00000359984 SPP1P10451 314 aa15.52■□□□□ 0.07
CLN3-205ENST00000359984 NECAP1Q8NC96 275 aa15.52■□□□□ 0.07
CLN3-205ENST00000359984 TMEM116Q8NCL8 245 aa15.52■□□□□ 0.07
CLN3-205ENST00000359984 S4R3C0 116 aa15.52■□□□□ 0.07
CLN3-205ENST00000359984 H3BUA1 57 aa15.51■□□□□ 0.07
CLN3-205ENST00000359984 BRI3O95415 125 aa15.51■□□□□ 0.07
CLN3-205ENST00000359984 ACSM6Q6P461 480 aa15.51■□□□□ 0.07
CLN3-205ENST00000359984 MARC2Q969Z3 335 aa15.51■□□□□ 0.07
CLN3-205ENST00000359984 GNPNAT1Q96EK6 184 aaPredicted RBP15.51■□□□□ 0.07
CLN3-205ENST00000359984 MGST2Q99735 147 aa15.51■□□□□ 0.07
CLN3-205ENST00000359984 NPCDR1Q9BY65 106 aa15.51■□□□□ 0.07
CLN3-205ENST00000359984 RAB19A4D1S5 217 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 TCF21O43680 179 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 MPDU1O75352 247 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 IGHG4P01861 327 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 C15orf32Q32M92 178 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 OR4X1Q8NH49 305 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 KLK15Q9H2R5 256 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 MAST4O15021 2626 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 TRGV3P03979 118 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 SEC11BP0C7V7 166 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 C10orf99Q6UWK7 81 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 CENPVQ7Z7K6 275 aaPredicted RBP15.5■□□□□ 0.07
CLN3-205ENST00000359984 THAP8Q8NA92 274 aa15.5■□□□□ 0.07
CLN3-205ENST00000359984 IGKV1D-37A0A075B6S9 117 aa15.49■□□□□ 0.07
CLN3-205ENST00000359984 ZNF705EA8MWA4 302 aaPredicted RBP15.49■□□□□ 0.07
CLN3-205ENST00000359984 PF4V1P10720 104 aa15.49■□□□□ 0.07
CLN3-205ENST00000359984 OR2G3Q8NGZ4 309 aa15.49■□□□□ 0.07
CLN3-205ENST00000359984 VN1R17PQ8TDU5 208 aa15.49■□□□□ 0.07
CLN3-205ENST00000359984 GGTLC1Q9BX51 225 aa15.49■□□□□ 0.07
CLN3-205ENST00000359984 FAM223BA6NKX1 122 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 AGPAT2O15120 278 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms